D. rerio Gene: sema3ga - ENSDARG00000042545 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042545
Namesema3ga
Descriptionsema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga [Source:ZFIN;Acc:ZDB-GENE-050513-3]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
90.82
  • 90.82
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.75e3
  • 3.75e3
87.45
  • 87.45
AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
7.88e3
  • 7.88e3
  • 9.28e3
73.62
  • 73.62
  • 68.94
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
8.53e3
  • 8.53e3
  • 1.12e4
  • 1.60e4
71.46
  • 71.46
  • 62.50
  • 46.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
8.67e3
  • 8.67e3
  • 1.04e4
  • 1.29e4
  • 1.44e4
  • 1.45e4
70.97
  • 70.97
  • 65.22
  • 56.90
  • 51.81
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.69e3
  • 8.69e3
70.89
  • 70.89
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.24e3
  • 9.24e3
69.07
  • 69.07
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
9.25e3
  • 9.25e3
69.02
  • 69.02
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.79e3
  • 9.79e3
67.23
  • 67.23
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.58
  • 66.58
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.00e4
  • 1.00e4
66.44
  • 66.44
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.87
  • 64.87
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.59
  • 64.59
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.96
  • 62.96
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.33
  • 61.33
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.22e4
  • 1.22e4
  • 1.72e4
59.27
  • 59.27
  • 42.33
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
  • 1.61e4
57.17
  • 57.17
  • 46.09
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
1.30e4
  • 1.30e4
  • 1.39e4
  • 1.49e4
56.49
  • 56.49
  • 53.55
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.37e4
  • 1.37e4
  • 1.40e4
54.10
  • 54.10
  • 53.21
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.31
  • 52.31
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.88
  • 50.88
AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.67
  • 49.67
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.50
  • 49.50
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.18
  • 49.18
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.61e4
  • 1.61e4
45.96
  • 45.96
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.00
  • 41.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC163710, BC163715, BX544876, CR450776
EnsemblENSDARG00000042545 (sema3ga)
Uniprot/SPTREMBLA1L5C9, A1L5C9_DANRE
ZFINZDB-GENE-050513-3 (sema3ga)

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