D. rerio Gene: sema3h - ENSDARG00000042616 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042616
Namesema3h
Descriptionsema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H [Source:ZFIN;Acc:ZDB-GENE-990715-8]
OrganismDanio rerio (zebrafish)
Synonym(s)sema3g, sema8, semaz8

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000027Segmentation:20-25 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.69e3
  • 5.69e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 7.97e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.71e3
  • 8.71e3
  • 8.79e3
  • 9.96e3
  • 9.96e3
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
80.95
  • 80.95
  • 74.99
  • 74.99
  • 73.52
  • 73.32
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 70.82
  • 70.82
  • 70.57
  • 66.65
  • 66.65
  • 40.59
  • 40.53
  • 40.52
  • 40.40
  • 40.36
  • 40.33
  • 40.18
  • 39.75
  • 39.40
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.13e3
  • 9.13e3
  • 1.81e4
69.43
  • 69.43
  • 39.24
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.31e4
  • 1.36e4
  • 1.41e4
66.67
  • 66.67
  • 56.22
  • 54.52
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003934mesenchyme pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
  • 1.37e4
  • 1.39e4
  • 1.48e4
59.98
  • 59.98
  • 54.13
  • 53.41
  • 50.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.25e4
  • 1.25e4
  • 1.28e4
  • 1.29e4
  • 1.32e4
  • 1.34e4
58.31
  • 58.31
  • 57.12
  • 56.65
  • 55.86
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
1.25e4
  • 1.25e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000034Hatching:Pec-fin
1.28e4
  • 1.28e4
  • 1.33e4
  • 1.42e4
  • 1.49e4
57.14
  • 57.14
  • 55.53
  • 52.60
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000034Hatching:Pec-fin
1.41e4
  • 1.41e4
  • 1.42e4
  • 1.49e4
52.92
  • 52.92
  • 52.60
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000028Segmentation:26+ somites
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.42e4
  • 1.42e4
  • 1.71e4
52.35
  • 52.35
  • 42.72
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.84
  • 49.84
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.52e4
  • 1.52e4
  • 1.73e4
  • 1.74e4
  • 1.77e4
  • 1.78e4
  • 1.83e4
  • 1.94e4
49.20
  • 49.20
  • 41.91
  • 41.64
  • 40.57
  • 40.54
  • 38.77
  • 35.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
47.94
  • 47.94
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.48
  • 47.48
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.35
  • 45.35
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.12
  • 43.12
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.01
  • 38.01
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.89e4
  • 1.89e4
  • 1.92e4
36.85
  • 36.85
  • 35.68
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.41
  • 36.41
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.40
  • 33.40
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.39
  • 26.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC162689, BX784025
EnsemblENSDARG00000042616 (sema3h)
Uniprot/SPTREMBLQ1LVE1, Q1LVE1_DANRE
ZFINZDB-GENE-990715-8 (sema3h)

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