D. rerio Gene: sod2 - ENSDARG00000042644 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042644
Namesod2
Descriptionsuperoxide dismutase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-7742]
OrganismDanio rerio (zebrafish)
Synonym(s)cb463, mn-sod, sod(mn), wu:fj33b01, zgc:73051

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
424
  • 424
98.59
  • 98.59
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
438
  • 438
  • 780
  • 1.21e4
98.54
  • 98.54
  • 97.39
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
594
  • 594
98.01
  • 98.01
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
631
  • 631
97.89
  • 97.89
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
765
  • 765
  • 1.15e3
97.44
  • 97.44
  • 96.14
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
796
  • 796
  • 4.24e3
  • 5.41e3
  • 6.55e3
  • 1.17e4
97.34
  • 97.34
  • 85.81
  • 81.88
  • 78.08
  • 60.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
796
  • 796
97.34
  • 97.34
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000104life cycle
807
  • 807
  • 7.77e3
  • 1.22e4
  • 1.36e4
  • 1.41e4
97.30
  • 97.30
  • 74.00
  • 59.08
  • 54.53
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
820
  • 820
97.26
  • 97.26
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
858
  • 858
97.13
  • 97.13
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
874
  • 874
97.08
  • 97.08
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
880
  • 880
97.06
  • 97.06
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
899
  • 899
96.99
  • 96.99
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
923
  • 923
  • 1.10e4
  • 1.12e4
  • 1.31e4
  • 1.35e4
96.91
  • 96.91
  • 63.32
  • 62.49
  • 56.23
  • 54.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
952
  • 952
96.82
  • 96.82
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.09e3
  • 1.09e3
  • 3.48e3
  • 6.28e3
  • 6.98e3
  • 8.75e3
  • 1.03e4
  • 1.19e4
  • 1.30e4
  • 1.54e4
96.35
  • 96.35
  • 88.35
  • 78.98
  • 76.62
  • 70.70
  • 65.55
  • 60.04
  • 56.53
  • 48.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:00072334 cell stage
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
  • 1.55e3
  • 1.75e3
  • 2.30e3
  • 2.76e3
  • 3.66e3
  • 4.19e3
  • 5.62e3
  • 6.13e3
  • 6.79e3
  • 7.26e3
  • 7.89e3
  • 1.16e4
  • 1.22e4
  • 1.39e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
96.04
  • 96.04
  • 94.82
  • 94.16
  • 92.29
  • 90.75
  • 87.75
  • 85.99
  • 81.18
  • 79.47
  • 77.27
  • 75.70
  • 73.59
  • 61.20
  • 59.21
  • 53.50
  • 50.20
  • 49.99
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.27e3
  • 1.27e3
  • 1.88e3
  • 1.97e3
95.75
  • 95.75
  • 93.70
  • 93.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
1.36e3
  • 1.36e3
  • 1.69e3
  • 1.71e3
  • 1.85e3
  • 2.70e3
95.44
  • 95.44
  • 94.34
  • 94.27
  • 93.82
  • 90.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.46e3
  • 1.46e3
95.11
  • 95.11
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.60e3
  • 1.60e3
94.65
  • 94.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.76e3
  • 1.76e3
94.10
  • 94.10
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
2.20e3
  • 2.20e3
  • 3.22e3
  • 4.30e3
  • 4.44e3
  • 6.59e3
  • 8.30e3
92.64
  • 92.64
  • 89.20
  • 85.59
  • 85.13
  • 77.93
  • 72.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.24e3
  • 3.24e3
89.16
  • 89.16
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.63e3
  • 3.63e3
  • 5.55e3
87.84
  • 87.84
  • 81.42
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.80e3
  • 3.80e3
87.27
  • 87.27
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.22
  • 87.22
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.50e3
  • 5.50e3
81.59
  • 81.59
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.30e3
  • 7.30e3
75.57
  • 75.57
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.26
  • 70.26
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.98e3
  • 9.98e3
66.59
  • 66.59
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
1.07e4
  • 1.07e4
  • 1.10e4
  • 1.12e4
  • 1.14e4
  • 1.16e4
  • 1.16e4
  • 1.16e4
  • 1.20e4
  • 1.29e4
  • 1.33e4
  • 1.49e4
64.26
  • 64.26
  • 63.32
  • 62.48
  • 61.75
  • 61.09
  • 61.09
  • 61.09
  • 59.98
  • 56.65
  • 55.53
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.12e4
62.48
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
  • 1.46e4
61.76
  • 61.76
  • 51.26
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.16e4
  • 1.16e4
61.15
  • 61.15
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
60.07
  • 60.07
AEIR
  • AEIR
UBERON:0003061blood island
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.27e4
  • 1.27e4
57.40
  • 57.40
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000033Hatching:Long-pec
1.33e4
  • 1.33e4
55.55
  • 55.55
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.39e4
  • 1.39e4
53.60
  • 53.60
AEIR
  • AEIR
UBERON:2002225posterior pronephric duct
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL929182, BC060895
EnsemblENSDARG00000042644 (sod2)
Uniprot/SPTREMBLQ6P980, Q6P980_DANRE
ZFINZDB-GENE-030131-7742 (sod2)

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