D. rerio Gene: ROBO3 - ENSDARG00000042646 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042646
NameROBO3
Descriptionzgc:77784 [Source:ZFIN;Acc:ZDB-GENE-040426-1874]
OrganismDanio rerio (zebrafish)
Synonym(s)flj21044, hgpps, hgps, rbig1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.18e3
  • 1.18e3
96.04
  • 96.04
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
5.77e3
  • 5.77e3
80.67
  • 80.67
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.02e3
  • 6.02e3
79.84
  • 79.84
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
8.96e3
  • 8.96e3
69.98
  • 69.98
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 9.25e3
  • 9.61e3
  • 9.71e3
  • 1.04e4
  • 1.05e4
  • 1.20e4
  • 1.26e4
69.98
  • 69.98
  • 69.03
  • 67.83
  • 67.48
  • 65.19
  • 64.98
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.19e3
  • 9.19e3
  • 1.03e4
  • 1.03e4
  • 1.05e4
  • 1.05e4
  • 1.09e4
  • 1.28e4
  • 1.29e4
69.22
  • 69.22
  • 65.61
  • 65.61
  • 64.98
  • 64.98
  • 63.61
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.61e3
  • 9.61e3
  • 9.71e3
  • 9.71e3
  • 1.02e4
  • 1.09e4
  • 1.18e4
  • 1.23e4
67.83
  • 67.83
  • 67.48
  • 67.48
  • 65.89
  • 63.61
  • 60.50
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.08e4
  • 1.08e4
  • 1.16e4
  • 1.21e4
  • 1.21e4
  • 1.34e4
63.86
  • 63.86
  • 61.31
  • 59.39
  • 59.35
  • 55.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.67
  • 62.67
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.03
  • 62.03
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.29e4
  • 1.29e4
  • 1.38e4
56.89
  • 56.89
  • 53.85
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.36e4
  • 1.36e4
  • 1.46e4
54.55
  • 54.55
  • 51.18
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.80
  • 52.80
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.54e4
  • 1.54e4
48.51
  • 48.51
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.64e4
  • 1.64e4
45.22
  • 45.22
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.11
  • 45.11
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.16
  • 44.16
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.30
  • 41.30
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.19
  • 40.19
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.92
  • 35.92
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.23
  • 35.23
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.12
  • 33.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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