D. rerio Gene: nrn1b - ENSDARG00000042656 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042656
Namenrn1b
Descriptionneuritin 1b [Source:ZFIN;Acc:ZDB-GENE-041010-98]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fc49b08, zgc:103762
Orthologs(s)15 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
2.55e3
  • 2.55e3
  • 4.41e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 6.97e3
  • 7.03e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
91.46
  • 91.46
  • 85.22
  • 83.33
  • 78.12
  • 77.77
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.66
  • 76.46
  • 76.46
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
9.71e3
  • 9.71e3
67.50
  • 67.50
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.90
  • 53.90
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.48e4
  • 1.48e4
50.43
  • 50.43
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.85
  • 46.85
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.71e4
  • 1.71e4
42.60
  • 42.60
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.42
  • 41.42
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.84e4
  • 1.84e4
  • 1.89e4
  • 2.03e4
  • 2.24e4
38.32
  • 38.32
  • 36.81
  • 32.03
  • 25.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.87
  • 37.87
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.94e4
  • 1.94e4
  • 2.19e4
34.93
  • 34.93
  • 26.76
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.67
  • 33.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.42
  • 23.42
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000042656.

Cross-references

EnsemblENSDARG00000042656 (nrn1b)
ZFINZDB-GENE-041010-98 (nrn1b)
EMBLCU570778
Uniprot/SPTREMBLB8JLP9, B8JLP9_DANRE

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