D. rerio Gene: apoba - ENSDARG00000042780 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042780
Nameapoba
Descriptionapolipoprotein Ba [Source:ZFIN;Acc:ZDB-GENE-070702-4]
OrganismDanio rerio (zebrafish)
Synonym(s)apob, fb79f11, im:6911942, wu:fb30e06, wu:fb79f11, zmp:0000000614

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
393
  • 393
  • 528
  • 659
  • 689
  • 827
  • 874
  • 2.23e3
  • 4.04e3
  • 4.51e3
  • 6.15e3
  • 7.42e3
  • 7.99e3
98.69
  • 98.69
  • 98.24
  • 97.80
  • 97.70
  • 97.23
  • 97.08
  • 92.53
  • 86.48
  • 84.89
  • 79.41
  • 75.14
  • 73.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
563
  • 563
  • 714
  • 1.43e3
  • 1.90e3
  • 2.25e3
  • 2.27e3
  • 2.53e3
  • 3.00e3
  • 3.18e3
  • 9.89e3
98.12
  • 98.12
  • 97.61
  • 95.22
  • 93.63
  • 92.48
  • 92.42
  • 91.52
  • 89.95
  • 89.37
  • 66.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
598
  • 598
98.00
  • 98.00
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.57e3
  • 1.57e3
  • 1.61e3
  • 4.95e3
94.75
  • 94.75
  • 94.62
  • 83.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.17e3
  • 2.17e3
92.75
  • 92.75
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.02e3
  • 7.02e3
76.50
  • 76.50
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
7.34e3
  • 7.34e3
  • 9.43e3
  • 1.19e4
  • 1.25e4
  • 1.45e4
75.41
  • 75.41
  • 68.43
  • 60.07
  • 57.99
  • 51.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.79e3
  • 7.79e3
73.93
  • 73.93
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
7.81e3
  • 7.81e3
73.84
  • 73.84
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.81
  • 73.81
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.54e3
  • 8.54e3
  • 8.96e3
  • 1.14e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.27e4
71.42
  • 71.42
  • 69.99
  • 61.88
  • 58.80
  • 58.31
  • 58.31
  • 58.31
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.14e4
  • 1.23e4
  • 1.23e4
  • 1.28e4
  • 1.32e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
66.65
  • 66.65
  • 62.48
  • 61.75
  • 58.80
  • 58.80
  • 57.14
  • 55.86
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.96
  • 59.96
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
  • 1.46e4
  • 1.89e4
52.60
  • 52.60
  • 51.22
  • 36.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.43e4
  • 1.43e4
52.02
  • 52.02
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.85
  • 48.85
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.53e4
  • 1.53e4
48.74
  • 48.74
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.32
  • 47.32
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.78
  • 30.78
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
24.86
  • 24.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX072551
EnsemblENSDARG00000042780 (apoba)
Uniprot/SPTREMBLE7FBD3, E7FBD3_DANRE
ZFINZDB-GENE-070702-4 (apoba)

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