D. rerio Gene: mmp9 - ENSDARG00000042816 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042816
Namemmp9
Descriptionmatrix metallopeptidase 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2132]
OrganismDanio rerio (zebrafish)
Synonym(s)fj05a08, gelatinase b, wu:fb02g06, wu:fb07b05, wu:fi98c09, wu:fj05a08, zfmmp-9, zgc:64165

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
1.26e3
  • 1.26e3
  • 1.49e4
95.79
  • 95.79
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
95.21
  • 95.21
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.54e3
  • 1.54e3
  • 1.47e4
  • 1.50e4
94.85
  • 94.85
  • 50.68
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
92.56
  • 92.56
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.01e3
  • 3.01e3
89.93
  • 89.93
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.20e3
  • 4.20e3
85.93
  • 85.93
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.93e3
  • 5.93e3
80.15
  • 80.15
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
6.11e3
  • 6.11e3
  • 1.12e4
  • 1.83e4
79.55
  • 79.55
  • 62.50
  • 38.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000096mature neutrophil
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000362epidermal cell
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.92e3
  • 7.92e3
73.50
  • 73.50
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
8.78e3
  • 8.78e3
  • 1.41e4
  • 1.47e4
  • 1.51e4
  • 1.80e4
70.61
  • 70.61
  • 52.90
  • 50.76
  • 49.46
  • 39.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.06e3
  • 9.06e3
69.68
  • 69.68
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.90e3
  • 9.90e3
66.86
  • 66.86
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.43
  • 65.43
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.21
  • 65.21
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.09e4
  • 1.09e4
  • 1.63e4
63.62
  • 63.62
  • 45.39
AEIR
  • AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.23e4
  • 1.23e4
  • 1.53e4
58.96
  • 58.96
  • 48.88
AEIR
  • AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.48
  • 57.48
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.96
  • 56.96
AEIR
  • AEIR
UBERON:0004535cardiovascular system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.29e4
  • 1.29e4
  • 1.33e4
  • 1.49e4
  • 1.49e4
56.65
  • 56.65
  • 55.55
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.32e4
  • 1.32e4
  • 1.36e4
  • 1.36e4
55.97
  • 55.97
  • 54.52
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.02
  • 55.02
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.34e4
  • 1.34e4
  • 1.41e4
54.98
  • 54.98
  • 52.94
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.36e4
  • 1.36e4
  • 1.65e4
54.59
  • 54.59
  • 44.68
AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
1.39e4
  • 1.39e4
  • 1.39e4
53.31
  • 53.31
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.83
  • 51.83
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.37
  • 51.37
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
UBERON:0004537blood vasculature
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2005029rostral blood island
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
CL:0000763myeloid cell
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.82
  • 48.82
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.65e4
  • 1.65e4
44.88
  • 44.88
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCR391966
EnsemblENSDARG00000042816 (mmp9)
Uniprot/SPTREMBLF1QC76, F1QC76_DANRE
ZFINZDB-GENE-040426-2132 (mmp9)

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