D. rerio Gene: tyms - ENSDARG00000042894 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042894
Nametyms
Descriptionthymidylate synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-59]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:56465, zgc:77659
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
215
  • 215
99.28
  • 99.28
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
302
  • 302
98.99
  • 98.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
478
  • 478
  • 1.05e3
  • 2.54e3
  • 3.45e3
  • 4.02e3
98.40
  • 98.40
  • 96.49
  • 91.50
  • 88.45
  • 86.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
741
  • 741
  • 2.52e3
  • 2.60e3
  • 3.19e3
  • 4.16e3
  • 4.48e3
  • 5.21e3
  • 5.54e3
  • 5.59e3
  • 5.63e3
  • 5.76e3
  • 5.76e3
  • 6.21e3
  • 8.33e3
  • 1.44e4
  • 1.47e4
  • 1.49e4
  • 1.49e4
97.52
  • 97.52
  • 91.58
  • 91.30
  • 89.33
  • 86.07
  • 85.01
  • 82.56
  • 81.46
  • 81.30
  • 81.14
  • 80.72
  • 80.71
  • 79.19
  • 72.11
  • 51.88
  • 50.68
  • 50.20
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.15e3
  • 1.15e3
96.14
  • 96.14
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.24e3
  • 1.24e3
95.86
  • 95.86
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.27e3
  • 1.27e3
  • 1.21e4
  • 1.31e4
95.74
  • 95.74
  • 59.59
  • 56.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
1.49e3
  • 1.49e3
  • 3.23e3
  • 5.26e3
  • 1.17e4
  • 1.20e4
95.03
  • 95.03
  • 89.19
  • 82.39
  • 60.84
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.60e3
  • 1.60e3
94.65
  • 94.65
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
1.89e3
  • 1.89e3
  • 2.02e3
  • 2.39e3
  • 2.48e3
  • 3.23e3
  • 3.60e3
  • 4.04e3
  • 4.41e3
  • 5.30e3
  • 6.80e3
93.67
  • 93.67
  • 93.26
  • 92.00
  • 91.69
  • 89.20
  • 87.95
  • 86.46
  • 85.23
  • 82.27
  • 77.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.96e3
  • 1.96e3
93.43
  • 93.43
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.19e3
  • 2.19e3
92.67
  • 92.67
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.59
  • 92.59
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.89e3
  • 2.89e3
90.34
  • 90.34
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.60e3
  • 3.60e3
  • 1.67e4
87.95
  • 87.95
  • 43.92
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
3.76e3
  • 3.76e3
  • 4.60e3
  • 5.54e3
  • 6.17e3
  • 6.32e3
  • 6.38e3
87.41
  • 87.41
  • 84.62
  • 81.46
  • 79.35
  • 78.84
  • 78.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
87.12
  • 87.12
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.42e3
  • 4.42e3
85.19
  • 85.19
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.89e3
  • 4.89e3
83.62
  • 83.62
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.39
  • 83.39
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.00e3
  • 5.00e3
83.26
  • 83.26
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
  • 1.48e4
83.06
  • 83.06
  • 50.34
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.42e3
  • 5.42e3
  • 5.80e3
  • 6.28e3
81.84
  • 81.84
  • 80.59
  • 78.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.53e3
  • 5.53e3
  • 8.03e3
81.49
  • 81.49
  • 73.12
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.78e3
  • 5.78e3
80.64
  • 80.64
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.48e3
  • 6.48e3
78.29
  • 78.29
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.51e3
  • 6.51e3
78.22
  • 78.22
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.60e3
  • 6.60e3
77.91
  • 77.91
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.98e3
  • 6.98e3
76.63
  • 76.63
AEIR
  • AEIR
UBERON:0003080anterior neural tube
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.62e3
  • 7.62e3
74.50
  • 74.50
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.50
  • 66.50
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.03e4
  • 1.03e4
  • 1.12e4
  • 1.12e4
  • 1.12e4
65.37
  • 65.37
  • 62.49
  • 62.49
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
  • 1.07e4
  • 1.12e4
64.27
  • 64.27
  • 64.27
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.12
  • 61.12
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.17e4
  • 1.17e4
  • 1.18e4
  • 1.20e4
  • 1.23e4
  • 1.23e4
  • 1.28e4
60.70
  • 60.70
  • 60.50
  • 59.98
  • 58.80
  • 58.80
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.18e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.26e4
  • 1.26e4
60.50
  • 60.50
  • 59.50
  • 58.80
  • 58.31
  • 58.31
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.18e4
  • 1.21e4
  • 1.21e4
60.50
  • 60.50
  • 60.50
  • 59.36
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
59.98
  • 59.98
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
58.80
  • 58.80
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.26e4
  • 1.26e4
  • 1.26e4
57.87
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
56.48
  • 56.48
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.13
  • 54.13
AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.41e4
  • 1.41e4
52.92
  • 52.92
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000042894.

Cross-references

EnsemblENSDARG00000042894 (tyms)
ZFINZDB-GENE-040426-59 (tyms)
EMBLBC065845, FP016237
Uniprot/SPTREMBLQ6P045, Q6P045_DANRE

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