D. rerio Gene: sypa - ENSDARG00000042974 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042974
Namesypa
Descriptionsynaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
OrganismDanio rerio (zebrafish)
Synonym(s)syp

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
624
  • 624
  • 2.49e3
  • 4.81e3
  • 5.98e3
  • 7.20e3
97.91
  • 97.91
  • 91.66
  • 83.89
  • 79.97
  • 75.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
943
  • 943
  • 3.32e3
96.85
  • 96.85
  • 88.88
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.12e3
  • 1.12e3
  • 1.76e3
96.24
  • 96.24
  • 94.11
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.21e3
  • 3.21e3
89.24
  • 89.24
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.74e3
  • 5.74e3
80.78
  • 80.78
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.80e3
  • 6.80e3
77.24
  • 77.24
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.29e3
  • 9.29e3
68.89
  • 68.89
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.20
  • 48.20
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.07
  • 44.07
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
  • 1.95e4
42.88
  • 42.88
  • 34.61
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
36.99
  • 36.99
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.56
  • 36.56
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.28
  • 35.28
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.96
  • 32.96
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.54
  • 30.54
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.19
  • 29.19
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.60
  • 27.60
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBX072561, BX649575
EnsemblENSDARG00000042974 (sypa)
Uniprot/SPTREMBLB0S5B9, B0S5B9_DANRE
ZFINZDB-GENE-031104-2 (sypa)

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