D. rerio Gene: sptlc1 - ENSDARG00000042995 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042995
Namesptlc1
Descriptionserine palmitoyltransferase, long chain base subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050522-61]
OrganismDanio rerio (zebrafish)
Synonym(s)fc75h04, fp41c08, wu:fc75h04, wu:fp41c08, zgc:112247
Orthologs(s)25 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.56
  • 93.56
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.09e3
  • 2.09e3
93.00
  • 93.00
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.19e3
  • 2.19e3
92.67
  • 92.67
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.61e3
  • 2.61e3
91.25
  • 91.25
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
2.91e3
  • 2.91e3
  • 4.11e3
  • 4.40e3
  • 5.80e3
  • 6.99e3
90.26
  • 90.26
  • 86.25
  • 85.27
  • 80.59
  • 76.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.44e3
  • 3.44e3
88.47
  • 88.47
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.06
  • 87.06
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
3.88e3
  • 3.88e3
  • 3.93e3
  • 3.93e3
  • 4.70e3
  • 5.49e3
  • 8.95e3
87.02
  • 87.02
  • 86.85
  • 86.83
  • 84.26
  • 81.63
  • 70.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.30e3
  • 4.30e3
85.60
  • 85.60
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.35e3
  • 4.35e3
85.44
  • 85.44
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
4.59e3
  • 4.59e3
  • 4.98e3
  • 6.16e3
  • 6.18e3
  • 6.29e3
  • 6.54e3
  • 6.55e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.92e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.84e3
  • 7.91e3
  • 8.39e3
  • 8.52e3
  • 8.66e3
  • 8.82e3
  • 8.85e3
  • 8.96e3
  • 8.96e3
  • 9.66e3
  • 9.67e3
  • 1.41e4
  • 1.50e4
84.65
  • 84.65
  • 83.33
  • 79.37
  • 79.30
  • 78.94
  • 78.12
  • 78.05
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.85
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.75
  • 73.52
  • 71.92
  • 71.47
  • 71.01
  • 70.48
  • 70.36
  • 69.99
  • 69.99
  • 67.65
  • 67.61
  • 52.63
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.68e3
  • 4.68e3
84.32
  • 84.32
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.81e3
  • 4.81e3
83.89
  • 83.89
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.85e3
  • 4.85e3
83.75
  • 83.75
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.48e3
  • 5.48e3
  • 5.81e3
  • 7.39e3
  • 7.52e3
  • 7.69e3
  • 7.89e3
  • 8.04e3
  • 8.29e3
  • 8.77e3
  • 1.01e4
81.66
  • 81.66
  • 80.56
  • 75.26
  • 74.81
  • 74.25
  • 73.60
  • 73.08
  • 72.26
  • 70.65
  • 66.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.82e3
  • 5.82e3
80.50
  • 80.50
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.88e3
  • 5.88e3
  • 6.68e3
80.30
  • 80.30
  • 77.62
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.08e3
  • 6.08e3
79.64
  • 79.64
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.62e3
  • 6.62e3
77.84
  • 77.84
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.14e3
  • 7.14e3
  • 7.15e3
76.09
  • 76.09
  • 76.06
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.18e3
  • 7.18e3
  • 7.42e3
  • 9.53e3
75.94
  • 75.94
  • 75.17
  • 68.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
74.99
  • 74.99
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.75e3
  • 7.75e3
74.04
  • 74.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.81e3
  • 7.81e3
73.86
  • 73.86
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.22e3
  • 8.22e3
  • 9.31e3
72.49
  • 72.49
  • 68.82
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.35e3
  • 8.35e3
72.04
  • 72.04
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.56e3
  • 8.56e3
71.33
  • 71.33
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
9.01e3
  • 9.01e3
  • 9.05e3
69.85
  • 69.85
  • 69.69
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.41e3
  • 9.41e3
  • 9.54e3
  • 9.56e3
  • 1.12e4
68.50
  • 68.50
  • 68.04
  • 67.97
  • 62.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.46e3
  • 9.46e3
68.34
  • 68.34
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.16
  • 66.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000042995.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000042995.

Cross-references

EnsemblENSDARG00000042995 (sptlc1)
ZFINZDB-GENE-050522-61 (sptlc1)
EMBLCR352227
Uniprot/SPTREMBLF1QEL4, F1QEL4_DANRE, Q502G6, Q502G6_DANRE

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