D. rerio Gene: capn3b - ENSDARG00000043035 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043035
Namecapn3b
Descriptioncalpain 3b [Source:ZFIN;Acc:ZDB-GENE-041001-149]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-12h9.9
Orthologs(s)15 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
89.37
  • 89.37
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.22e3
  • 3.22e3
  • 7.40e3
89.21
  • 89.21
  • 75.23
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
3.96e3
  • 3.96e3
  • 7.09e3
  • 1.06e4
  • 1.36e4
  • 1.63e4
86.74
  • 86.74
  • 76.26
  • 64.38
  • 54.33
  • 45.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.80e3
  • 6.80e3
77.25
  • 77.25
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.33e3
  • 9.33e3
68.78
  • 68.78
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000160intestine
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.19e4
62.50
  • 62.50
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
  • 1.35e4
56.24
  • 56.24
  • 54.73
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.31e4
  • 1.31e4
  • 1.53e4
56.04
  • 56.04
  • 48.92
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.57
  • 50.57
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 2.08e4
49.89
  • 49.89
  • 30.22
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.06
  • 46.06
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.06
  • 43.06
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.33
  • 41.33
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.41
  • 37.41
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.07
  • 31.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species15 genesCompare expression

Orthology information comes from OMA : ENSDARG00000043035.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression
Bilateria4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000043035.

Cross-references

EnsemblENSDARG00000043035 (capn3b)
ZFINZDB-GENE-041001-149 (capn3b)
EMBLAL954831
Uniprot/SPTREMBLE9QE31, E9QE31_DANRE, F1R632, F1R632_DANRE

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