D. rerio Gene: MMP23B - ENSDARG00000043079 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043079
NameMMP23B
Descriptionmatrix metallopeptidase 23B [Source:HGNC Symbol;Acc:HGNC:7171]
OrganismDanio rerio (zebrafish)
Synonym(s)mifr, mifr-1, mmp22

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.24e3
  • 1.24e3
  • 2.06e3
95.86
  • 95.86
  • 93.12
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.83
  • 94.83
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.97
  • 82.97
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
7.12e3
  • 7.12e3
  • 1.02e4
  • 1.15e4
  • 1.15e4
  • 1.15e4
  • 1.15e4
  • 1.18e4
  • 1.18e4
  • 1.19e4
  • 1.22e4
  • 1.22e4
76.17
  • 76.17
  • 65.89
  • 61.63
  • 61.51
  • 61.40
  • 61.40
  • 60.48
  • 60.37
  • 60.16
  • 59.29
  • 59.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.94e3
  • 7.94e3
73.41
  • 73.41
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.12e3
  • 8.12e3
  • 1.12e4
72.82
  • 72.82
  • 62.55
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.70e3
  • 8.70e3
70.88
  • 70.88
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.92
  • 63.92
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.29
  • 63.29
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.10e4
  • 1.10e4
63.12
  • 63.12
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.10e4
  • 1.10e4
  • 1.61e4
63.09
  • 63.09
  • 46.07
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.74
  • 62.74
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.33e4
  • 1.43e4
62.61
  • 62.61
  • 55.47
  • 52.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.34
  • 61.34
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.09
  • 60.09
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.06
  • 60.06
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.19e4
  • 1.19e4
60.05
  • 60.05
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.30
  • 59.30
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.23e4
  • 1.23e4
  • 1.36e4
  • 1.47e4
  • 1.47e4
58.96
  • 58.96
  • 54.56
  • 50.77
  • 50.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.93
  • 58.93
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.61
  • 55.61
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.33e4
  • 1.33e4
  • 1.37e4
  • 1.51e4
  • 1.52e4
  • 1.52e4
  • 1.60e4
  • 1.64e4
  • 1.69e4
55.32
  • 55.32
  • 54.19
  • 49.38
  • 48.97
  • 48.96
  • 46.37
  • 45.06
  • 43.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.39e4
  • 1.39e4
  • 1.49e4
  • 1.78e4
53.37
  • 53.37
  • 50.09
  • 40.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.84
  • 52.84
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
  • 1.48e4
50.64
  • 50.64
  • 50.38
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.25
  • 50.25
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.50e4
  • 1.50e4
49.83
  • 49.83
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.67e4
  • 1.67e4
44.09
  • 44.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000043079 (MMP23B)
HGNCHGNC:7171 (MMP23B)
Uniprot/SPTREMBLE7FGL6, E7FGL6_DANRE

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