D. rerio Gene: cldne - ENSDARG00000043128 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043128
Namecldne
Descriptionclaudin e [Source:ZFIN;Acc:ZDB-GENE-010328-5]
OrganismDanio rerio (zebrafish)
Synonym(s)cb84, fb16e12, wu:fb16e12
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
309
  • 309
  • 3.02e3
  • 3.32e3
  • 3.75e3
  • 9.64e3
  • 1.19e4
98.97
  • 98.97
  • 89.88
  • 88.87
  • 87.46
  • 67.72
  • 60.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
418
  • 418
98.60
  • 98.60
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
821
  • 821
  • 1.17e4
97.26
  • 97.26
  • 60.95
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
849
  • 849
97.16
  • 97.16
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
1.67e3
  • 1.67e3
  • 1.80e3
  • 2.38e3
  • 2.47e3
  • 4.50e3
  • 5.67e3
  • 5.88e3
  • 8.68e3
  • 1.04e4
  • 1.27e4
94.41
  • 94.41
  • 93.97
  • 92.05
  • 91.72
  • 84.94
  • 81.00
  • 80.30
  • 70.93
  • 65.20
  • 57.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.77e3
  • 1.77e3
  • 6.75e3
94.08
  • 94.08
  • 77.41
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.44e3
  • 2.44e3
  • 2.62e3
91.84
  • 91.84
  • 91.22
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
4.27e3
  • 4.27e3
  • 4.27e3
  • 4.27e3
  • 7.97e3
  • 8.22e3
85.71
  • 85.71
  • 85.71
  • 85.71
  • 73.32
  • 72.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
4.27e3
  • 4.27e3
  • 7.03e3
  • 1.20e4
  • 1.20e4
  • 1.21e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
  • 1.33e4
85.71
  • 85.71
  • 76.46
  • 59.98
  • 59.98
  • 59.36
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 56.65
  • 56.65
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
5.60e3
  • 5.60e3
  • 8.22e3
  • 8.96e3
  • 9.19e3
  • 9.33e3
  • 9.33e3
  • 1.16e4
  • 1.19e4
  • 1.38e4
81.25
  • 81.25
  • 72.48
  • 70.00
  • 69.22
  • 68.74
  • 68.74
  • 61.09
  • 60.00
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.22e3
  • 6.22e3
79.19
  • 79.19
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
6.31e3
  • 6.31e3
78.86
  • 78.86
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.43e3
  • 6.43e3
78.47
  • 78.47
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.72e3
  • 6.72e3
  • 8.41e3
  • 1.19e4
77.49
  • 77.49
  • 71.85
  • 60.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007383enveloping layer of ectoderm
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
7.47e3
  • 7.47e3
  • 9.51e3
  • 1.12e4
  • 1.22e4
  • 1.34e4
  • 1.34e4
  • 1.34e4
74.99
  • 74.99
  • 68.17
  • 62.49
  • 59.08
  • 54.99
  • 54.99
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
8.02e3
  • 8.02e3
  • 1.21e4
  • 1.69e4
73.15
  • 73.15
  • 59.59
  • 43.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000109gastrula stage
  • ZFS:0000049segmentation
  • UBERON:0000106zygote stage
9.37e3
  • 9.37e3
  • 9.52e3
  • 9.57e3
  • 9.95e3
  • 1.00e4
  • 1.03e4
  • 1.09e4
  • 1.11e4
  • 1.11e4
  • 1.11e4
  • 1.11e4
  • 1.12e4
  • 1.17e4
  • 1.21e4
  • 1.25e4
  • 1.47e4
  • 1.49e4
  • 1.49e4
  • 1.80e4
68.61
  • 68.61
  • 68.13
  • 67.97
  • 66.68
  • 66.40
  • 65.45
  • 63.60
  • 62.95
  • 62.91
  • 62.86
  • 62.68
  • 62.58
  • 60.72
  • 59.57
  • 58.16
  • 50.90
  • 49.99
  • 49.95
  • 39.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001055pronephric duct opening
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.00e4
  • 1.00e4
66.50
  • 66.50
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.05e4
  • 1.05e4
  • 1.25e4
  • 1.25e4
64.98
  • 64.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
  • 1.98e4
64.48
  • 64.48
  • 33.80
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.48
  • 64.48
AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • UBERON:00072368 cell stage
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.97
  • 60.97
AEIR
  • AEIR
UBERON:0002199integument
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
  • 1.42e4
60.00
  • 60.00
  • 52.45
AEIR
  • AEIR
  • AEIR
ZFA:0001484superficial blastomere (Danio)
  • ZFS:0000015Blastula:Dome
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0000931proctodeum
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.27
  • 55.27
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.40e4
  • 1.40e4
53.19
  • 53.19
AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011150pharyngeal arch derived gill
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.17
  • 49.17
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.66e4
  • 1.66e4
44.53
  • 44.53
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.17
  • 31.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Neopterygii3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000043128.

Cross-references

EnsemblENSDARG00000043128 (cldne)
ZFINZDB-GENE-010328-5 (cldne)
EMBLAF359425, BC062846, CR382327
Uniprot/SPTREMBLQ90XR9, Q90XR9_DANRE

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