D. rerio Gene: pomca - ENSDARG00000043135 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043135
Namepomca
Descriptionproopiomelanocortin a [Source:ZFIN;Acc:ZDB-GENE-030513-2]
OrganismDanio rerio (zebrafish)
Synonym(s)acth, beta-endorphin, msh, pomc, si:bz36d5.1, si:bz36d5.2, si:bz36d5.4

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001898hypothalamus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
3.20e3
  • 3.20e3
  • 7.47e3
  • 9.33e3
  • 9.96e3
  • 1.22e4
  • 1.34e4
  • 1.36e4
  • 1.49e4
89.28
  • 89.28
  • 75.00
  • 68.74
  • 66.67
  • 59.08
  • 54.99
  • 54.53
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
3.73e3
  • 3.73e3
  • 4.98e3
  • 4.98e3
  • 6.22e3
  • 1.16e4
  • 1.49e4
87.50
  • 87.50
  • 83.34
  • 83.34
  • 79.16
  • 61.10
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.04e3
  • 4.04e3
  • 1.57e4
86.46
  • 86.46
  • 47.56
AEIR
  • AEIR
  • AEIR
ZFA:0005580rostral pars anterior (Danio)
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
  • 7.47e3
  • 7.47e3
83.34
  • 83.34
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
4.98e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
83.34
  • 83.34
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009122adenohypophyseal placode
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 5.97e3
  • 6.40e3
  • 7.47e3
  • 9.96e3
83.34
  • 83.34
  • 80.00
  • 78.57
  • 75.00
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
6.64e3
  • 6.64e3
  • 7.47e3
  • 8.71e3
  • 9.96e3
  • 1.08e4
77.77
  • 77.77
  • 74.99
  • 70.82
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002432pars intermedia of adenohypophysis
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.31e3
  • 8.31e3
72.16
  • 72.16
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.63e3
  • 9.63e3
  • 1.80e4
67.75
  • 67.75
  • 39.72
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.00e4
  • 1.00e4
  • 1.53e4
  • 1.56e4
66.37
  • 66.37
  • 48.64
  • 47.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.27e4
  • 1.27e4
57.57
  • 57.57
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.48
  • 50.48
AEIR
  • AEIR
CL:0000440melanocyte stimulating hormone secreting cell
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000467adrenocorticotropic hormone secreting cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001937lateral hypothalamic nucleus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • ZFS:0000038Larval:Day 6
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0000634caudal hypothalamic zone (Danio)
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.69
  • 49.69
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.14
  • 44.14
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
1.68e4
  • 1.68e4
  • 1.78e4
  • 1.81e4
  • 1.89e4
  • 2.21e4
  • 2.24e4
  • 2.31e4
43.87
  • 43.87
  • 40.54
  • 39.27
  • 36.71
  • 25.93
  • 24.86
  • 22.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.15
  • 42.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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