D. rerio Gene: slc1a3b - ENSDARG00000043148 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043148
Nameslc1a3b
Descriptionsolute carrier family 1 (glial high affinity glutamate transporter), member 3b [Source:ZFIN;Acc:ZDB-GENE-090708-3]
OrganismDanio rerio (zebrafish)
Synonym(s)eaat1b, glastb, si:dkey-21n12.2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.38e3
  • 1.38e3
95.39
  • 95.39
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
  • 5.23e3
93.38
  • 93.38
  • 82.50
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
2.57e3
  • 2.57e3
  • 3.19e3
  • 9.60e3
  • 1.62e4
  • 1.75e4
91.39
  • 91.39
  • 89.31
  • 67.87
  • 45.69
  • 41.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.73e3
  • 6.73e3
  • 9.60e3
77.46
  • 77.46
  • 67.85
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.33e3
  • 8.33e3
72.12
  • 72.12
AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.61e4
  • 1.61e4
46.12
  • 46.12
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.85e4
  • 1.85e4
37.96
  • 37.96
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.31e4
  • 2.31e4
22.64
  • 22.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLAL929053, HM138694
EnsemblENSDARG00000043148 (slc1a3b)
Uniprot/SPTREMBLD7RVS0, D7RVS0_DANRE
ZFINZDB-GENE-090708-3 (slc1a3b)

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