D. rerio Gene: hhla2a.1 - ENSDARG00000043182 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043182
Namehhla2a.1
DescriptionHERV-H LTR-associating 2a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050327-45]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:113255
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.08e3
  • 1.08e3
  • 1.85e3
96.39
  • 96.39
  • 93.82
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.71
  • 91.71
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.92e3
  • 2.92e3
  • 3.39e3
90.22
  • 90.22
  • 88.66
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.95e3
  • 2.95e3
90.14
  • 90.14
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
3.15e3
  • 3.15e3
  • 3.93e3
  • 4.03e3
  • 4.65e3
  • 4.74e3
89.46
  • 89.46
  • 86.85
  • 86.52
  • 84.44
  • 84.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.15
  • 89.15
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.40e3
  • 3.40e3
88.61
  • 88.61
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.75e3
  • 3.75e3
  • 7.23e3
87.44
  • 87.44
  • 75.78
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
83.59
  • 83.59
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.88e3
  • 7.88e3
73.62
  • 73.62
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.91e3
  • 7.91e3
  • 1.50e4
73.52
  • 73.52
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.81e3
  • 8.81e3
70.51
  • 70.51
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.86e3
  • 8.86e3
70.35
  • 70.35
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.35e3
  • 9.35e3
68.69
  • 68.69
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.58e3
  • 9.58e3
67.93
  • 67.93
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.42
  • 67.42
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.20
  • 64.20
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.09e4
  • 1.09e4
  • 1.35e4
63.66
  • 63.66
  • 54.84
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.65
  • 60.65
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.85
  • 58.85
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.57
  • 55.57
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.52e4
  • 1.52e4
  • 1.55e4
49.01
  • 49.01
  • 48.18
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.26
  • 48.26
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.85
  • 39.85
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000043182.

Cross-references

EnsemblENSDARG00000043182 (hhla2a.1)
ZFINZDB-GENE-050327-45 (hhla2a.1)
EMBLBC091846, CR376845
Uniprot/SPTREMBLE9QIT0, E9QIT0_DANRE, Q58EM0, Q58EM0_DANRE

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