D. rerio Gene: si:rp71-1i20.2 - ENSDARG00000043198 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043198
Namesi:rp71-1i20.2
Descriptionsi:rp71-1i20.2 [Source:ZFIN;Acc:ZDB-GENE-040724-207]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7148368, wu:fa95b07, zgc:113457

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.70e3
  • 1.70e3
94.32
  • 94.32
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
91.78
  • 91.78
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.08
  • 89.08
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
9.71e3
  • 9.71e3
67.49
  • 67.49
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.12e4
  • 1.12e4
62.35
  • 62.35
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.06
  • 62.06
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0004707pharyngula stage
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.22e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.42e4
  • 1.47e4
  • 1.50e4
  • 1.78e4
  • 1.79e4
  • 1.81e4
  • 1.83e4
59.08
  • 59.08
  • 59.08
  • 58.32
  • 52.52
  • 50.68
  • 49.80
  • 40.32
  • 40.18
  • 39.39
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.33e4
  • 1.33e4
  • 1.75e4
55.38
  • 55.38
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.91
  • 53.91
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.42e4
  • 1.42e4
  • 1.60e4
52.46
  • 52.46
  • 46.55
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.53e4
  • 1.53e4
  • 1.65e4
  • 1.78e4
48.61
  • 48.61
  • 44.70
  • 40.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
1.57e4
  • 1.57e4
  • 1.62e4
  • 1.65e4
  • 1.79e4
  • 2.05e4
  • 2.08e4
47.51
  • 47.51
  • 45.89
  • 44.89
  • 40.03
  • 31.42
  • 30.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.00
  • 44.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.32
  • 40.32
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
  • 2.17e4
39.84
  • 39.84
  • 27.33
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.55
  • 38.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL627164
EnsemblENSDARG00000043198 (si:rp71-1i20.2)
Uniprot/SPTREMBLA8DZ56, A8DZ56_DANRE
ZFINZDB-GENE-040724-207 (si:rp71-1i20.2)

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