Gene: kcnh5a - ENSDARG00000043220 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000043220
Name	kcnh5a
Description	potassium voltage-gated channel, subfamily H (eag-related), member 5a [Source:ZFIN;Acc:ZDB-GENE-061106-2]
Organism	Danio rerio (zebrafish)
Synonym(s)	kcnh5, si:dkey-100h21.1
Orthologs(s)	1 orthologs
Paralog(s)	3 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	7.15e3 7.15e3	76.06 76.06	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.57e4 1.57e4	47.28 47.28	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.88e4 1.88e4	37.13 37.13	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.92e4 1.92e4	35.77 35.77	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.03e4 2.03e4	32.08 32.08	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	2.14e4 2.14e4 2.24e4	28.49 28.49 24.84	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.25e4 2.25e4	24.51 24.51	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	2.26e4 2.26e4	24.43 24.43	AEIR AEIR
UBERON:0000922	embryo	[+] 4 stages UBERON:0000068embryo stage ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage	2.27e4 2.27e4 2.29e4 2.31e4 2.34e4	24.09 24.09 23.47 22.72 21.68	AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	2.37e4 2.37e4 2.46e4	20.66 20.66 17.57	AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Bilateria	1 species Caenorhabditis elegans (nematode)	1 gene WBGene00001171 egl-2	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000043220.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Bilateria	3 genes ENSDARG00000023236 kcnh1b ENSDARG00000024167 kcnh1a ENSDARG00000069117 kcnh5b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000043220.

Cross-references

Ensembl	ENSDARG00000043220 (kcnh5a)
ZFIN	ZDB-GENE-061106-2 (kcnh5a)
EMBL	BX248118, BX890573
Uniprot/SPTREMBL	F1QNK9, F1QNK9_DANRE, Q5TYT4, Q5TYT4_DANRE