D. rerio Gene: irf1b - ENSDARG00000043249 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043249
Nameirf1b
Descriptioninterferon regulatory factor 1b [Source:ZFIN;Acc:ZDB-GENE-041114-13]
OrganismDanio rerio (zebrafish)
Synonym(s)irf1, irf11, zgc:103566, zgc:165608

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
477
  • 477
98.41
  • 98.41
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
484
  • 484
98.38
  • 98.38
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
629
  • 629
97.90
  • 97.90
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
638
  • 638
  • 1.02e4
97.87
  • 97.87
  • 65.88
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
750
  • 750
97.49
  • 97.49
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
924
  • 924
  • 3.02e3
96.91
  • 96.91
  • 89.90
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.07e3
  • 1.07e3
96.42
  • 96.42
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.17e3
  • 1.17e3
96.09
  • 96.09
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.52e3
  • 1.52e3
94.91
  • 94.91
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.77e3
  • 1.77e3
  • 3.14e3
94.09
  • 94.09
  • 89.50
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.90e3
  • 1.90e3
93.63
  • 93.63
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
93.07
  • 93.07
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
92.76
  • 92.76
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.74e3
  • 2.74e3
90.84
  • 90.84
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
3.21e3
  • 3.21e3
  • 3.78e3
  • 4.33e3
  • 4.54e3
  • 7.35e3
  • 7.94e3
  • 8.70e3
  • 8.95e3
  • 9.71e3
  • 1.12e4
89.25
  • 89.25
  • 87.34
  • 85.50
  • 84.82
  • 75.39
  • 73.42
  • 70.86
  • 70.03
  • 67.48
  • 62.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.29e3
  • 3.29e3
88.97
  • 88.97
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
3.35e3
  • 3.35e3
  • 6.87e3
  • 1.02e4
88.77
  • 88.77
  • 77.01
  • 66.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.82e3
  • 3.82e3
  • 1.08e4
87.21
  • 87.21
  • 63.70
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
3.97e3
  • 3.97e3
  • 4.38e3
  • 6.13e3
  • 9.06e3
  • 9.50e3
  • 9.79e3
86.72
  • 86.72
  • 85.33
  • 79.48
  • 69.65
  • 68.18
  • 67.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
85.89
  • 85.89
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0004707pharyngula stage
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
4.68e3
  • 4.68e3
  • 7.08e3
  • 8.11e3
  • 8.17e3
  • 8.34e3
  • 8.79e3
  • 8.79e3
  • 8.81e3
  • 9.04e3
  • 9.19e3
  • 9.56e3
  • 9.67e3
  • 9.86e3
  • 1.03e4
  • 1.10e4
  • 1.14e4
  • 1.22e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.29e4
84.32
  • 84.32
  • 76.31
  • 72.84
  • 72.64
  • 72.08
  • 70.58
  • 70.56
  • 70.49
  • 69.74
  • 69.24
  • 68.00
  • 67.61
  • 67.00
  • 65.61
  • 63.32
  • 61.75
  • 59.08
  • 59.08
  • 59.08
  • 58.32
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.80e3
  • 4.80e3
83.92
  • 83.92
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.89e3
  • 4.89e3
83.62
  • 83.62
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
5.12e3
  • 5.12e3
  • 9.01e3
  • 9.10e3
  • 1.04e4
82.87
  • 82.87
  • 69.84
  • 69.53
  • 65.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.31e3
  • 5.31e3
82.24
  • 82.24
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.93e3
  • 5.93e3
80.13
  • 80.13
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
7.09e3
  • 7.09e3
  • 9.30e3
  • 1.00e4
  • 1.34e4
76.27
  • 76.27
  • 68.86
  • 66.36
  • 55.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.11e3
  • 8.11e3
72.85
  • 72.85
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
69.75
  • 69.75
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.22e4
  • 1.22e4
59.21
  • 59.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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