D. rerio Gene: atraid - ENSDARG00000043388 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043388
Nameatraid
Descriptionall-trans retinoic acid-induced differentiation factor [Source:ZFIN;Acc:ZDB-GENE-040724-177]
OrganismDanio rerio (zebrafish)
Synonym(s)apr-3, apr3, q502e7, q5rid6, si:ch211-101l18.3
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
2.92e3
  • 2.92e3
  • 7.82e3
  • 9.07e3
  • 1.08e4
90.23
  • 90.23
  • 73.82
  • 69.65
  • 63.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
3.96e3
  • 3.96e3
  • 1.02e4
  • 1.49e4
86.74
  • 86.74
  • 65.93
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.21e3
  • 4.21e3
  • 7.03e3
85.90
  • 85.90
  • 76.46
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
5.69e3
  • 5.69e3
  • 9.64e3
  • 9.90e3
  • 1.02e4
  • 1.03e4
  • 1.16e4
  • 1.42e4
  • 1.43e4
  • 1.48e4
  • 1.49e4
80.96
  • 80.96
  • 67.73
  • 66.86
  • 65.90
  • 65.45
  • 61.11
  • 52.61
  • 52.07
  • 50.31
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.33e3
  • 6.33e3
78.81
  • 78.81
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.74e3
  • 7.74e3
74.08
  • 74.08
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.97e3
  • 7.97e3
73.31
  • 73.31
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.01e3
  • 8.01e3
  • 1.01e4
73.18
  • 73.18
  • 66.16
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.69e3
  • 8.69e3
70.91
  • 70.91
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.80e3
  • 8.80e3
70.53
  • 70.53
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.87e3
  • 8.87e3
70.29
  • 70.29
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.93e3
  • 8.93e3
70.10
  • 70.10
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000019Gastrula:Shield
9.22e3
  • 9.22e3
  • 1.32e4
  • 1.33e4
  • 1.34e4
  • 1.35e4
  • 1.37e4
  • 1.41e4
  • 1.41e4
  • 1.41e4
  • 1.42e4
  • 1.42e4
  • 1.44e4
  • 1.49e4
  • 1.50e4
  • 1.61e4
69.12
  • 69.12
  • 55.86
  • 55.60
  • 55.27
  • 54.83
  • 54.15
  • 52.88
  • 52.82
  • 52.74
  • 52.61
  • 52.37
  • 51.70
  • 50.25
  • 49.80
  • 46.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
9.23e3
  • 9.23e3
  • 1.12e4
  • 1.29e4
69.11
  • 69.11
  • 62.54
  • 56.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.33e3
  • 9.33e3
68.76
  • 68.76
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.68e3
  • 9.68e3
67.59
  • 67.59
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.79e3
  • 9.79e3
67.21
  • 67.21
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.65
  • 64.65
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.26
  • 62.26
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.20
  • 61.20
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.89
  • 58.89
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.27e4
  • 1.27e4
57.60
  • 57.60
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.34e4
  • 1.34e4
  • 1.75e4
  • 1.76e4
54.99
  • 54.99
  • 41.42
  • 40.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.37e4
  • 1.37e4
53.98
  • 53.98
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.41
  • 53.41
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.41e4
  • 1.41e4
  • 1.42e4
52.79
  • 52.79
  • 52.45
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.67e4
  • 1.67e4
44.21
  • 44.21
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.81e4
  • 1.81e4
39.29
  • 39.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000043388 (atraid)
ZFINZDB-GENE-040724-177 (atraid)
EMBLBC095730, BC133993, BX276101
Uniprot/SWISSPROTA3KNS9, ARAID_DANRE

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