D. rerio Gene: efhd1 - ENSDARG00000043446 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043446
Nameefhd1
DescriptionEF-hand domain family, member D1 [Source:ZFIN;Acc:ZDB-GENE-030131-7461]
OrganismDanio rerio (zebrafish)
Synonym(s)fj19b07, si:ch211-281l24.1, wu:fj19b07

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
863
  • 863
  • 1.32e4
  • 1.41e4
97.11
  • 97.11
  • 55.77
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
962
  • 962
  • 2.40e3
  • 2.45e3
  • 2.66e3
  • 4.45e3
  • 8.09e3
96.78
  • 96.78
  • 91.97
  • 91.80
  • 91.11
  • 85.11
  • 72.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.10e3
  • 1.10e3
96.32
  • 96.32
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.13e3
  • 1.13e3
  • 2.13e3
96.22
  • 96.22
  • 92.86
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
1.57e3
  • 1.57e3
  • 2.05e3
  • 3.98e3
  • 4.58e3
  • 7.31e3
94.74
  • 94.74
  • 93.13
  • 86.67
  • 84.67
  • 75.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
93.99
  • 93.99
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.95e3
  • 1.95e3
  • 3.52e3
93.46
  • 93.46
  • 88.22
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.01e3
  • 2.01e3
93.28
  • 93.28
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
91.99
  • 91.99
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
  • 9.43e3
  • 1.22e4
  • 1.43e4
90.04
  • 90.04
  • 68.41
  • 58.99
  • 52.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
3.50e3
  • 3.50e3
  • 3.55e3
  • 3.75e3
  • 3.82e3
  • 3.86e3
  • 4.98e3
  • 7.74e3
  • 8.17e3
  • 1.09e4
  • 1.11e4
  • 1.11e4
  • 1.19e4
  • 1.24e4
  • 1.41e4
  • 1.47e4
  • 1.48e4
  • 1.50e4
88.28
  • 88.28
  • 88.12
  • 87.45
  • 87.23
  • 87.09
  • 83.34
  • 74.09
  • 72.65
  • 63.60
  • 62.88
  • 62.69
  • 60.25
  • 58.50
  • 52.81
  • 50.68
  • 50.61
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.71e3
  • 3.71e3
87.59
  • 87.59
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
3.81e3
  • 3.81e3
  • 5.04e3
  • 5.06e3
  • 5.49e3
  • 5.80e3
  • 6.18e3
  • 6.69e3
  • 8.24e3
  • 1.27e4
  • 1.55e4
87.23
  • 87.23
  • 83.13
  • 83.07
  • 81.62
  • 80.59
  • 79.32
  • 77.61
  • 72.41
  • 57.63
  • 48.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.74
  • 85.74
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.67e3
  • 5.67e3
81.00
  • 81.00
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
77.58
  • 77.58
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.89e3
  • 6.89e3
76.92
  • 76.92
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
7.01e3
  • 7.01e3
  • 9.41e3
  • 1.06e4
76.54
  • 76.54
  • 68.50
  • 64.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.08e3
  • 8.08e3
72.93
  • 72.93
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.81e3
  • 8.81e3
70.50
  • 70.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.87e3
  • 8.87e3
70.29
  • 70.29
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.58
  • 66.58
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.08e4
  • 1.08e4
63.92
  • 63.92
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
  • 1.42e4
56.48
  • 56.48
  • 52.57
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.25
  • 55.25
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
  • 1.52e4
50.57
  • 50.57
  • 49.02
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.68e4
  • 1.68e4
43.64
  • 43.64
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.72e4
  • 1.72e4
42.39
  • 42.39
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.17
  • 37.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLCR388129
EnsemblENSDARG00000043446 (efhd1)
Uniprot/SPTREMBLF1R647, F1R647_DANRE
ZFINZDB-GENE-030131-7461 (efhd1)

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