D. rerio Gene: gapdh - ENSDARG00000043457 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043457
Namegapdh
Descriptionglyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
OrganismDanio rerio (zebrafish)
Synonym(s)bb02e05, cb609, gapd, mg:bb02e05, q1rm54, wu:fb33a10, wu:ft80f05

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.34
  • 7.34
99.98
  • 99.98
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
11.9
  • 11.9
99.96
  • 99.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
17.0
  • 17.0
99.95
  • 99.95
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
17.0
  • 17.0
99.95
  • 99.95
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
35.3
  • 35.3
99.89
  • 99.89
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
43.4
  • 43.4
  • 84.7
  • 7.97e3
  • 8.65e3
  • 1.03e4
99.86
  • 99.86
  • 99.72
  • 73.32
  • 71.04
  • 65.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
44.0
  • 44.0
  • 1.29e3
99.86
  • 99.86
  • 95.68
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
48.5
  • 48.5
  • 315
  • 355
  • 398
  • 920
99.84
  • 99.84
  • 98.95
  • 98.82
  • 98.67
  • 96.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
54.0
  • 54.0
99.82
  • 99.82
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
62.2
  • 62.2
99.80
  • 99.80
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
71.3
  • 71.3
  • 9.46e3
99.76
  • 99.76
  • 68.31
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
107
  • 107
  • 180
  • 182
  • 206
  • 223
  • 256
  • 372
  • 790
  • 947
  • 950
99.65
  • 99.65
  • 99.40
  • 99.39
  • 99.31
  • 99.26
  • 99.14
  • 98.76
  • 97.36
  • 96.83
  • 96.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
110
  • 110
  • 159
  • 189
99.63
  • 99.63
  • 99.47
  • 99.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
116
  • 116
99.61
  • 99.61
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
137
  • 137
99.55
  • 99.55
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
145
  • 145
99.52
  • 99.52
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
160
  • 160
99.47
  • 99.47
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
170
  • 170
  • 214
  • 215
  • 216
  • 218
  • 268
  • 403
  • 745
  • 1.50e3
  • 1.50e3
  • 1.54e3
  • 1.67e3
  • 1.73e3
  • 1.93e3
  • 2.35e3
  • 3.26e3
  • 1.35e4
  • 1.41e4
99.43
  • 99.43
  • 99.29
  • 99.28
  • 99.28
  • 99.27
  • 99.11
  • 98.65
  • 97.51
  • 94.99
  • 94.97
  • 94.85
  • 94.42
  • 94.19
  • 93.55
  • 92.15
  • 89.07
  • 54.64
  • 52.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
265
  • 265
99.12
  • 99.12
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
382
  • 382
98.72
  • 98.72
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
465
  • 465
98.45
  • 98.45
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
693
  • 693
  • 807
  • 998
  • 1.21e3
  • 1.86e3
  • 2.87e3
97.68
  • 97.68
  • 97.30
  • 96.66
  • 95.96
  • 93.77
  • 90.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.44e3
  • 1.44e3
95.18
  • 95.18
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.57e3
  • 1.57e3
94.74
  • 94.74
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.80e3
  • 1.80e3
  • 9.20e3
93.98
  • 93.98
  • 69.18
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
2.08e3
  • 2.08e3
93.04
  • 93.04
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
  • 8.31e3
91.80
  • 91.80
  • 72.17
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.15e3
  • 3.15e3
89.47
  • 89.47
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
6.41e3
  • 6.41e3
  • 1.20e4
  • 1.20e4
  • 1.24e4
  • 1.25e4
78.55
  • 78.55
  • 59.98
  • 59.98
  • 58.58
  • 58.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
6.69e3
  • 6.69e3
77.61
  • 77.61
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.63e3
  • 7.63e3
74.45
  • 74.45
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.06e3
  • 8.06e3
73.03
  • 73.03
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.08e3
  • 8.08e3
72.94
  • 72.94
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.12e3
  • 9.12e3
69.46
  • 69.46
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.38e3
  • 9.38e3
68.60
  • 68.60
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.16e4
  • 1.22e4
62.53
  • 62.53
  • 61.10
  • 59.01
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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