D. rerio Gene: rbbp8 - ENSDARG00000043480 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043480
Namerbbp8
Descriptionretinoblastoma binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-050220-14]
OrganismDanio rerio (zebrafish)
Synonym(s)q5eaz7, zgc:113143

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
4.98e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.31e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 9.74e3
  • 1.02e4
  • 1.02e4
  • 1.08e4
  • 1.08e4
  • 1.12e4
  • 1.13e4
  • 1.13e4
  • 1.14e4
  • 1.18e4
  • 1.21e4
  • 1.25e4
  • 1.26e4
  • 1.47e4
  • 1.49e4
  • 1.49e4
83.33
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 75.52
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
  • 67.38
  • 65.98
  • 65.91
  • 63.94
  • 63.80
  • 62.52
  • 62.16
  • 62.13
  • 61.87
  • 60.60
  • 59.37
  • 58.14
  • 57.65
  • 50.90
  • 50.25
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.08
  • 83.08
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
5.20e3
  • 5.20e3
  • 6.56e3
  • 7.33e3
  • 9.50e3
  • 1.15e4
82.60
  • 82.60
  • 78.02
  • 75.46
  • 68.20
  • 61.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.14e3
  • 6.14e3
79.45
  • 79.45
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.20e3
  • 6.20e3
79.24
  • 79.24
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.29e3
  • 6.29e3
78.95
  • 78.95
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.96e3
  • 6.96e3
  • 1.50e4
76.70
  • 76.70
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.24e3
  • 7.24e3
  • 8.69e3
  • 9.38e3
75.75
  • 75.75
  • 70.92
  • 68.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.76e3
  • 7.76e3
74.02
  • 74.02
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
8.47e3
  • 8.47e3
  • 1.06e4
  • 1.09e4
  • 1.18e4
  • 1.19e4
  • 1.20e4
  • 1.24e4
  • 1.32e4
  • 1.38e4
  • 1.64e4
71.65
  • 71.65
  • 64.57
  • 63.55
  • 60.46
  • 60.07
  • 59.68
  • 58.59
  • 55.87
  • 53.70
  • 45.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
8.75e3
  • 8.75e3
  • 1.05e4
  • 1.06e4
  • 1.07e4
  • 1.07e4
  • 1.19e4
70.71
  • 70.71
  • 64.94
  • 64.62
  • 64.14
  • 64.08
  • 60.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.86e3
  • 8.86e3
70.33
  • 70.33
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.02e3
  • 9.02e3
69.79
  • 69.79
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.02e4
  • 1.02e4
65.79
  • 65.79
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.62
  • 62.62
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.16
  • 62.16
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
  • 1.53e4
60.64
  • 60.64
  • 48.78
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.56
  • 60.56
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.19e4
  • 1.19e4
60.14
  • 60.14
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.30e4
  • 1.30e4
  • 1.40e4
56.64
  • 56.64
  • 53.22
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
  • 1.35e4
55.01
  • 55.01
  • 54.85
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.35e4
  • 1.35e4
  • 1.55e4
  • 1.75e4
54.80
  • 54.80
  • 48.05
  • 41.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.74
  • 54.74
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.68
  • 53.68
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
  • 2.07e4
50.56
  • 50.56
  • 30.84
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.46
  • 50.46
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.57
  • 48.57
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.46
  • 46.46
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.09
  • 46.09
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.41
  • 45.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
44.93
  • 44.93
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.34
  • 42.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC090186, CU634022, FP089511
EnsemblENSDARG00000043480 (rbbp8)
Uniprot/SPTREMBLX1WBG1, X1WBG1_DANRE
Uniprot/SWISSPROTCOM1_DANRE, F1R983
ZFINZDB-GENE-050220-14 (rbbp8)

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