D. rerio Gene: otx5 - ENSDARG00000043483 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043483
Nameotx5
Descriptionorthodenticle homolog 5 [Source:ZFIN;Acc:ZDB-GENE-030508-1]
OrganismDanio rerio (zebrafish)
Synonym(s)cb828

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
701
  • 701
  • 7.62e3
  • 8.96e3
  • 9.10e3
  • 9.60e3
  • 1.12e4
  • 1.15e4
  • 1.39e4
97.66
  • 97.66
  • 74.50
  • 69.98
  • 69.55
  • 67.86
  • 62.50
  • 61.56
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.30e3
  • 1.30e3
95.64
  • 95.64
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.57e3
  • 1.57e3
  • 2.85e3
  • 4.27e3
  • 5.98e3
  • 6.40e3
  • 6.97e3
  • 8.40e3
  • 9.13e3
  • 9.34e3
  • 9.60e3
  • 9.96e3
  • 1.31e4
94.74
  • 94.74
  • 90.47
  • 85.71
  • 79.99
  • 78.57
  • 76.66
  • 71.86
  • 69.43
  • 68.74
  • 67.85
  • 66.67
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
  • 5.23e3
93.97
  • 93.97
  • 82.50
AEIR
  • AEIR
  • AEIR
UBERON:0015238pineal complex
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000036Larval:Day 4
  • ZFS:0000028Segmentation:26+ somites
2.49e3
  • 2.49e3
  • 3.73e3
  • 4.98e3
  • 4.98e3
  • 7.47e3
  • 9.96e3
  • 1.49e4
91.67
  • 91.67
  • 87.50
  • 83.34
  • 83.34
  • 75.00
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
3.10e3
  • 3.10e3
  • 4.85e3
  • 1.43e4
  • 1.84e4
  • 1.92e4
89.61
  • 89.61
  • 83.77
  • 52.01
  • 38.37
  • 35.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
7.26e3
  • 7.26e3
  • 1.14e4
  • 1.32e4
75.69
  • 75.69
  • 61.83
  • 55.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0015241parapineal organ
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000034Hatching:Pec-fin
7.47e3
  • 7.47e3
  • 7.47e3
  • 9.96e3
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.91e3
  • 7.91e3
  • 7.91e3
  • 7.91e3
73.52
  • 73.52
  • 73.52
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000109gastrula stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.20e4
  • 1.20e4
  • 1.39e4
  • 1.44e4
  • 1.47e4
  • 1.49e4
  • 1.54e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
59.80
  • 59.80
  • 53.44
  • 51.73
  • 50.90
  • 49.99
  • 48.48
  • 40.38
  • 40.18
  • 39.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.46e4
59.12
  • 59.12
  • 51.26
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.22e4
  • 1.22e4
  • 1.49e4
59.08
  • 59.08
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.24e4
  • 1.24e4
  • 1.28e4
58.33
  • 58.33
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
  • 2.14e4
45.34
  • 45.34
  • 28.44
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCU633848
EnsemblENSDARG00000043483 (otx5)
Uniprot/SPTREMBLF1R982, F1R982_DANRE
ZFINZDB-GENE-030508-1 (otx5)

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