D. rerio Gene: cltca - ENSDARG00000043493 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043493
Namecltca
Descriptionclathrin, heavy chain a (Hc) [Source:ZFIN;Acc:ZDB-GENE-030131-2299]
OrganismDanio rerio (zebrafish)
Synonym(s)cb1033, cltc, wu:fc03e11, wu:fc49a11, wu:fd07f02
Orthologs(s)24 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
822
  • 822
97.25
  • 97.25
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
955
  • 955
96.81
  • 96.81
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.10e3
  • 1.10e3
96.31
  • 96.31
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
1.21e3
  • 1.21e3
  • 1.41e3
  • 1.41e3
  • 2.07e3
  • 2.09e3
  • 2.28e3
  • 2.57e3
  • 2.59e3
  • 2.79e3
  • 4.55e3
95.94
  • 95.94
  • 95.27
  • 95.27
  • 93.08
  • 93.00
  • 92.36
  • 91.40
  • 91.34
  • 90.67
  • 84.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
1.27e3
  • 1.27e3
  • 1.46e3
  • 1.85e3
  • 1.92e3
  • 2.03e3
  • 2.30e3
  • 2.39e3
  • 2.40e3
  • 3.07e3
  • 3.44e3
  • 4.44e3
  • 4.48e3
  • 4.59e3
  • 5.50e3
  • 1.33e4
  • 1.47e4
  • 1.49e4
  • 1.49e4
95.75
  • 95.75
  • 95.11
  • 93.80
  • 93.56
  • 93.20
  • 92.30
  • 91.99
  • 91.97
  • 89.71
  • 88.48
  • 85.13
  • 85.01
  • 84.64
  • 81.58
  • 55.48
  • 50.90
  • 50.20
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.30e3
  • 1.30e3
  • 2.45e3
95.64
  • 95.64
  • 91.79
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
  • 1.50e3
  • 1.85e3
  • 1.99e3
95.22
  • 95.22
  • 94.99
  • 93.81
  • 93.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
  • 2.64e3
95.22
  • 95.22
  • 91.15
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.44e3
  • 1.44e3
95.19
  • 95.19
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.17
  • 95.17
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.45e3
  • 1.45e3
95.16
  • 95.16
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.57e3
  • 1.57e3
94.75
  • 94.75
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.64e3
  • 1.64e3
94.50
  • 94.50
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.74e3
  • 1.74e3
  • 2.72e3
94.19
  • 94.19
  • 90.90
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.75e3
  • 1.75e3
94.14
  • 94.14
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.75e3
  • 1.75e3
94.14
  • 94.14
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.85e3
  • 1.85e3
93.80
  • 93.80
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.92e3
  • 1.92e3
  • 3.65e3
93.58
  • 93.58
  • 87.79
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.93e3
  • 1.93e3
93.54
  • 93.54
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.98e3
  • 1.98e3
  • 1.99e3
  • 2.07e3
93.37
  • 93.37
  • 93.35
  • 93.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.00e3
  • 2.00e3
93.30
  • 93.30
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.68
  • 90.68
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
2.84e3
  • 2.84e3
  • 3.21e3
  • 3.74e3
  • 3.82e3
  • 3.90e3
  • 4.16e3
90.50
  • 90.50
  • 89.26
  • 87.48
  • 87.21
  • 86.93
  • 86.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.97e3
  • 2.97e3
90.06
  • 90.06
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.03e3
  • 3.03e3
89.86
  • 89.86
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
3.04e3
  • 3.04e3
  • 3.36e3
  • 3.55e3
  • 3.95e3
  • 4.01e3
89.84
  • 89.84
  • 88.76
  • 88.13
  • 86.77
  • 86.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.74
  • 88.74
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.68
  • 88.68
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.42e3
  • 3.42e3
88.54
  • 88.54
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.75e3
  • 3.75e3
87.45
  • 87.45
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.06e3
  • 4.06e3
86.41
  • 86.41
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.54e3
  • 4.54e3
84.80
  • 84.80
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.02
  • 84.02
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.24e4
  • 1.24e4
  • 1.24e4
58.32
  • 58.32
  • 58.32
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000043493.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Eumetazoa2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000043493.

Cross-references

EnsemblENSDARG00000043493 (cltca)
ZFINZDB-GENE-030131-2299 (cltca)
EMBLCR392341
Uniprot/SPTREMBLF1R966, F1R966_DANRE

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