D. rerio Gene: prdx6 - ENSDARG00000043511 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043511
Nameprdx6
Descriptionperoxiredoxin 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1778]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:73360
Orthologs(s)21 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
305
  • 305
98.98
  • 98.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
546
  • 546
  • 9.34e3
98.18
  • 98.18
  • 68.74
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
647
  • 647
97.84
  • 97.84
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
689
  • 689
97.70
  • 97.70
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
720
  • 720
97.59
  • 97.59
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
833
  • 833
  • 1.20e3
97.21
  • 97.21
  • 95.97
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
841
  • 841
97.19
  • 97.19
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
851
  • 851
97.15
  • 97.15
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
907
  • 907
96.97
  • 96.97
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
935
  • 935
  • 1.32e3
96.87
  • 96.87
  • 95.59
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
937
  • 937
96.87
  • 96.87
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
946
  • 946
96.84
  • 96.84
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
998
  • 998
96.66
  • 96.66
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.20e3
  • 1.20e3
95.98
  • 95.98
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.26e3
  • 1.26e3
  • 2.93e3
95.80
  • 95.80
  • 90.20
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.28e3
  • 1.28e3
  • 1.44e3
95.71
  • 95.71
  • 95.18
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.28e3
  • 1.28e3
95.71
  • 95.71
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.45e3
  • 1.45e3
  • 1.84e3
95.16
  • 95.16
  • 93.86
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.53e3
  • 1.53e3
94.90
  • 94.90
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.59e3
  • 1.59e3
  • 2.16e3
  • 2.46e3
  • 2.93e3
  • 3.90e3
94.69
  • 94.69
  • 92.78
  • 91.77
  • 90.20
  • 86.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.60e3
  • 1.60e3
94.65
  • 94.65
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.84e3
  • 1.84e3
93.84
  • 93.84
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
93.36
  • 93.36
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.75e3
  • 2.75e3
90.80
  • 90.80
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
8.53e3
  • 8.53e3
71.43
  • 71.43
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
9.03e3
  • 9.03e3
69.77
  • 69.77
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.07e4
  • 1.07e4
  • 1.09e4
  • 1.10e4
  • 1.12e4
  • 1.17e4
64.28
  • 64.28
  • 63.63
  • 63.32
  • 62.49
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.10e4
64.27
  • 64.27
  • 63.32
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.26e4
  • 1.26e4
62.49
  • 62.49
  • 60.50
  • 59.50
  • 58.80
  • 58.31
  • 58.31
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
1.17e4
  • 1.17e4
  • 1.20e4
  • 1.21e4
  • 1.42e4
60.68
  • 60.68
  • 59.98
  • 59.50
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.18e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
60.50
  • 60.50
  • 59.50
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
59.98
  • 59.98
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.36e4
  • 1.36e4
  • 1.36e4
  • 1.36e4
  • 1.39e4
54.53
  • 54.53
  • 54.53
  • 54.53
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species20 genesCompare expression
Bilateria20 species21 genesCompare expression

Orthology information comes from OMA : ENSDARG00000043511.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Opisthokonta4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000043511.

Cross-references

EnsemblENSDARG00000043511 (prdx6)
ZFINZDB-GENE-040426-1778 (prdx6)
EMBLBX255937
Uniprot/SPTREMBLQ5TZD2, Q5TZD2_DANRE

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