D. rerio Gene: cwc27 - ENSDARG00000043727 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043727
Namecwc27
DescriptionCWC27 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1118]
OrganismDanio rerio (zebrafish)
Synonym(s)sdccag10, zgc:56702
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
3.00e3
  • 3.00e3
  • 3.88e3
  • 5.72e3
  • 6.71e3
  • 7.08e3
89.96
  • 89.96
  • 87.01
  • 80.84
  • 77.54
  • 76.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.74e3
  • 3.74e3
  • 1.50e4
87.47
  • 87.47
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.21
  • 87.21
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.41e3
  • 4.41e3
85.22
  • 85.22
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
5.01e3
  • 5.01e3
  • 5.83e3
  • 6.12e3
  • 6.34e3
  • 6.35e3
  • 6.63e3
  • 6.65e3
  • 6.72e3
  • 8.35e3
  • 8.74e3
83.23
  • 83.23
  • 80.49
  • 79.52
  • 78.78
  • 78.74
  • 77.82
  • 77.74
  • 77.50
  • 72.04
  • 70.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.10e3
  • 5.10e3
82.93
  • 82.93
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
5.29e3
  • 5.29e3
  • 5.40e3
  • 7.26e3
  • 8.83e3
  • 8.89e3
  • 9.63e3
82.28
  • 82.28
  • 81.91
  • 75.71
  • 70.43
  • 70.23
  • 67.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.46e3
  • 5.46e3
  • 6.55e3
  • 6.66e3
  • 1.21e4
81.71
  • 81.71
  • 78.07
  • 77.69
  • 59.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.70e3
  • 5.70e3
80.92
  • 80.92
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.82e3
  • 5.82e3
80.53
  • 80.53
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.84e3
  • 5.84e3
  • 1.09e4
80.45
  • 80.45
  • 63.54
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.01e3
  • 6.01e3
79.87
  • 79.87
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.06e3
  • 6.06e3
79.72
  • 79.72
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
6.10e3
  • 6.10e3
  • 6.22e3
  • 6.62e3
  • 7.05e3
  • 7.14e3
  • 7.26e3
  • 7.44e3
  • 7.85e3
  • 8.14e3
  • 8.50e3
  • 8.83e3
  • 9.43e3
  • 9.75e3
  • 9.82e3
  • 1.43e4
  • 1.50e4
  • 1.50e4
79.59
  • 79.59
  • 79.17
  • 77.83
  • 76.40
  • 76.11
  • 75.69
  • 75.08
  • 73.72
  • 72.74
  • 71.54
  • 70.43
  • 68.44
  • 67.34
  • 67.13
  • 51.99
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.18e3
  • 6.18e3
79.32
  • 79.32
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.55e3
  • 6.55e3
78.06
  • 78.06
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.50
  • 77.50
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
77.31
  • 77.31
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.78e3
  • 6.78e3
  • 7.84e3
77.29
  • 77.29
  • 73.74
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.12e3
  • 7.12e3
76.18
  • 76.18
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.13e3
  • 7.13e3
  • 8.07e3
76.12
  • 76.12
  • 72.99
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.16e3
  • 7.16e3
76.04
  • 76.04
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.82
  • 75.82
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.74e3
  • 7.74e3
74.08
  • 74.08
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.15e3
  • 8.15e3
72.73
  • 72.73
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.19e3
  • 8.19e3
72.58
  • 72.58
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.49e3
  • 8.49e3
71.59
  • 71.59
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.50e3
  • 8.50e3
71.55
  • 71.55
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.73e3
  • 8.73e3
70.78
  • 70.78
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.89e3
  • 8.89e3
70.22
  • 70.22
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.35e3
  • 9.35e3
68.69
  • 68.69
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
9.71e3
  • 9.71e3
  • 9.93e3
  • 1.07e4
67.48
  • 67.48
  • 66.75
  • 64.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
  • 1.04e4
67.41
  • 67.41
  • 65.18
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.93e3
  • 9.93e3
66.75
  • 66.75
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.27e4
  • 1.27e4
57.33
  • 57.33
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000043727.

Cross-references

EnsemblENSDARG00000043727 (cwc27)
ZFINZDB-GENE-040426-1118 (cwc27)
EMBLBX640403
Uniprot/SPTREMBLF1QRY1, F1QRY1_DANRE

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