Gene: rab3ab - ENSDARG00000043835 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000043835
Name	rab3ab
Description	RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
Organism	Danio rerio (zebrafish)
Synonym(s)	rab3a, si:ch211-255d18.4, zgc:112516
Orthologs(s)	21 orthologs
Paralog(s)	100 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	51.1 51.1	99.83 99.83	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.95e3 1.95e3 6.85e3	93.46 93.46 77.07	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.37e3 2.37e3	92.06 92.06	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	3.52e3 3.52e3 3.88e3 9.95e3 1.35e4 1.35e4	88.21 88.21 87.00 66.67 54.80 54.66	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	4.47e3 4.47e3 1.35e4	85.05 85.05 54.94	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	5.09e3 5.09e3 7.69e3	82.95 82.95 74.26	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.31e4 1.31e4	56.19 56.19	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.45e4 1.45e4	51.58 51.58	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.51e4 1.51e4	49.58 49.58	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.60e4 1.60e4	46.59 46.59	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.69e4 1.69e4	43.36 43.36	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.78e4 1.78e4	40.43 40.43	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.81e4 1.81e4	39.39 39.39	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.97e4 1.97e4	34.02 34.02	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.99e4 1.99e4	33.22 33.22	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	2.19e4 2.19e4	26.55 26.55	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.20e4 2.20e4	26.18 26.18	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.21e4 2.21e4	25.85 25.85	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	15 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Xenopus tropicalis (western clawed frog)	15 genes ENSG00000105649 RAB3A ENSMUSG00000031840 Rab3a ENSPTRG00000010697 RAB3A ENSGGOG00000008890 RAB3A ENSMMUG00000005027 RAB3A ENSRNOG00000019433 Rab3a ENSBTAG00000010635 RAB3A ENSSSCG00000013897 RAB3A ENSECAG00000023115 RAB3A ENSCAFG00000014945 RAB3A ENSFCAG00000002479 RAB3A ENSCPOG00000021287 RAB3A ENSMODG00000003214 RAB3A ENSOANG00000001291 RAB3A ENSXETG00000012930 rab3a	Compare expression	[+]
Bilateria	21 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila virilis Drosophila yakuba	21 genes ENSG00000105649 RAB3A ENSMUSG00000031840 Rab3a FBgn0005586 Rab3 WBGene00004267 rab-3 ENSPTRG00000010697 RAB3A ENSGGOG00000008890 RAB3A ENSMMUG00000005027 RAB3A ENSRNOG00000019433 Rab3a ENSBTAG00000010635 RAB3A ENSSSCG00000013897 RAB3A ENSECAG00000023115 RAB3A ENSCAFG00000014945 RAB3A ENSFCAG00000002479 RAB3A ENSCPOG00000021287 RAB3A ENSMODG00000003214 RAB3A ENSOANG00000001291 RAB3A ENSXETG00000012930 rab3a FBgn0088133 GF11093 FBgn0142909 GI20173 FBgn0207270 GJ20130 FBgn0230784 GE13081	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000043835.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Bilateria	5 genes ENSDARG00000014462 rab3c ENSDARG00000018107 rab3da ENSDARG00000042803 rab3b ENSDARG00000056347 rab3aa ENSDARG00000101534 rab3db	Compare expression	[+]
Eukaryota	100 genes ENSDARG00000004151 rab23 ENSDARG00000004301 rhogb ENSDARG00000005651 hrasb ENSDARG00000006553 rras ENSDARG00000007257 rab5ab ENSDARG00000008867 rap1b ENSDARG00000010844 kras ENSDARG00000012177 rab4b ENSDARG00000012553 rap1aa ENSDARG00000013161 zgc:55558 ENSDARG00000013203 RAC1 (1 to many) ENSDARG00000014340 rab11al ENSDARG00000014462 rab3c ENSDARG00000015649 rap2c ENSDARG00000015807 rab22a ENSDARG00000016059 rab5b ENSDARG00000016253 ralab ENSDARG00000018107 rab3da ENSDARG00000018328 rhocb ENSDARG00000018602 rab5aa ENSDARG00000019144 rab4a ENSDARG00000019312 rab39ba ENSDARG00000020128 RAB31 ENSDARG00000020250 rhoj ENSDARG00000020261 rab2a ENSDARG00000020497 rab7 ENSDARG00000020795 rac3b ENSDARG00000021287 zgc:91909 ENSDARG00000021309 rhoca ENSDARG00000025953 rhoq ENSDARG00000026098 si:dkey-13a21.4 ENSDARG00000026712 rab5c ENSDARG00000026845 rhoaa ENSDARG00000028401 rhogc ENSDARG00000029663 rab1ab ENSDARG00000030608 rhogd ENSDARG00000033056 zgc:171927 ENSDARG00000034215 rab42a ENSDARG00000034771 rab13 ENSDARG00000035188 rab14l ENSDARG00000036252 rras2 ENSDARG00000036499 zgc:162171 ENSDARG00000036501 rab39bb ENSDARG00000037884 rab30 ENSDARG00000037967 si:dkey-16l2.16 ENSDARG00000038010 rac2 ENSDARG00000038225 nras ENSDARG00000039162 rhebl1 ENSDARG00000040158 cdc42l ENSDARG00000040246 rap2ab ENSDARG00000040778 ralba ENSDARG00000041450 rab11a ENSDARG00000041878 rab11ba ENSDARG00000042803 rab3b ENSDARG00000044573 cdc42 ENSDARG00000045027 rab9a ENSDARG00000045463 ralaa ENSDARG00000046106 rab10 ENSDARG00000052263 rab1aa ENSDARG00000052954 rab25b ENSDARG00000054649 rac1l ENSDARG00000056347 rab3aa ENSDARG00000056479 rab1bb ENSDARG00000057869 cdc42l2 ENSDARG00000058044 rab1ba ENSDARG00000058425 rab35b ENSDARG00000058800 rab25a ENSDARG00000059404 rab43 ENSDARG00000062865 mras ENSDARG00000067920 rab8a ENSDARG00000068628 rab8b ENSDARG00000068653 rhoga ENSDARG00000069150 rit1 ENSDARG00000070121 rhoh ENSDARG00000074246 rab14 ENSDARG00000074849 rac1a ENSDARG00000075285 MRAS (1 to many) ENSDARG00000077553 CABZ01067868.1 ENSDARG00000087243 zgc:100918 ENSDARG00000087346 rap1ab ENSDARG00000087762 rab27b ENSDARG00000087954 rac1b ENSDARG00000090062 rac3a ENSDARG00000090086 rab11bb ENSDARG00000094673 rhoab ENSDARG00000096666 RAC1 (1 to many) ENSDARG00000098497 hrasa ENSDARG00000099279 ift27 ENSDARG00000099506 CABZ01028770.1 ENSDARG00000099709 rhoac ENSDARG00000100379 si:dkey-34d22.2 ENSDARG00000101170 rab42b ENSDARG00000101534 rab3db ENSDARG00000102078 RAB35 (1 to many) ENSDARG00000102580 RAB42 ENSDARG00000103032 rap2b ENSDARG00000103391 rab9b ENSDARG00000103934 megf8 ENSDARG00000103935 rab27a ENSDARG00000105254 RAB37	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000043835.

Cross-references

Ensembl	ENSDARG00000043835 (rab3ab)
ZFIN	ZDB-GENE-041210-268 (rab3ab)
EMBL	BC093355, BC164318, BX936438
Uniprot/SPTREMBL	Q5RGB5, Q5RGB5_DANRE