D. rerio Gene: rab3ab - ENSDARG00000043835 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043835
Namerab3ab
DescriptionRAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
OrganismDanio rerio (zebrafish)
Synonym(s)rab3a, si:ch211-255d18.4, zgc:112516
Orthologs(s)21 orthologs
Paralog(s)100 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
51.1
  • 51.1
99.83
  • 99.83
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.95e3
  • 1.95e3
  • 6.85e3
93.46
  • 93.46
  • 77.07
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
92.06
  • 92.06
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
3.52e3
  • 3.52e3
  • 3.88e3
  • 9.95e3
  • 1.35e4
  • 1.35e4
88.21
  • 88.21
  • 87.00
  • 66.67
  • 54.80
  • 54.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.47e3
  • 4.47e3
  • 1.35e4
85.05
  • 85.05
  • 54.94
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
  • 7.69e3
82.95
  • 82.95
  • 74.26
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.19
  • 56.19
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.58
  • 51.58
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.58
  • 49.58
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.60e4
  • 1.60e4
46.59
  • 46.59
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.36
  • 43.36
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.43
  • 40.43
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.81e4
  • 1.81e4
39.39
  • 39.39
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.02
  • 34.02
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.22
  • 33.22
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.55
  • 26.55
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.18
  • 26.18
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.21e4
  • 2.21e4
25.85
  • 25.85
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria21 species21 genesCompare expression

Orthology information comes from OMA : ENSDARG00000043835.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Bilateria5 genesCompare expression
Eukaryota100 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000043835.

Cross-references

EnsemblENSDARG00000043835 (rab3ab)
ZFINZDB-GENE-041210-268 (rab3ab)
EMBLBC093355, BC164318, BX936438
Uniprot/SPTREMBLQ5RGB5, Q5RGB5_DANRE

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