D. rerio Gene: nptnb - ENSDARG00000043864 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043864
Namenptnb
Descriptionneuroplastin b [Source:ZFIN;Acc:ZDB-GENE-040426-1821]
OrganismDanio rerio (zebrafish)
Synonym(s)ch1073-75f15.1, nptn, zgc:77326

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
815
  • 815
  • 7.47e3
97.28
  • 97.28
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
964
  • 964
  • 5.97e3
  • 7.47e3
96.78
  • 96.78
  • 80.00
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
  • 3.08e3
95.61
  • 95.61
  • 89.68
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.39e3
  • 1.39e3
  • 8.83e3
  • 8.96e3
95.34
  • 95.34
  • 70.44
  • 69.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.84e3
  • 1.84e3
  • 6.26e3
  • 1.20e4
  • 1.24e4
  • 1.28e4
93.84
  • 93.84
  • 79.06
  • 59.89
  • 58.57
  • 57.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.51e3
  • 3.51e3
  • 9.76e3
88.24
  • 88.24
  • 67.32
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.27e3
  • 4.27e3
  • 4.27e3
  • 6.54e3
  • 6.97e3
  • 6.97e3
  • 8.71e3
  • 9.60e3
85.71
  • 85.71
  • 85.71
  • 78.12
  • 76.66
  • 76.66
  • 70.82
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.55e3
  • 4.55e3
  • 5.23e3
  • 7.12e3
  • 7.47e3
  • 8.54e3
  • 9.71e3
  • 1.02e4
84.77
  • 84.77
  • 82.49
  • 76.18
  • 74.99
  • 71.41
  • 67.48
  • 65.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.67e3
  • 4.67e3
  • 4.67e3
  • 8.22e3
  • 8.22e3
  • 8.83e3
  • 1.07e4
  • 1.10e4
84.37
  • 84.37
  • 84.37
  • 72.48
  • 72.48
  • 70.44
  • 64.27
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
4.67e3
  • 4.67e3
  • 5.81e3
  • 6.97e3
  • 7.47e3
  • 7.86e3
  • 7.97e3
  • 8.54e3
84.37
  • 84.37
  • 80.55
  • 76.66
  • 74.99
  • 73.67
  • 73.32
  • 71.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.43e3
  • 5.43e3
  • 5.43e3
  • 9.44e3
  • 9.67e3
  • 1.23e4
  • 1.34e4
  • 1.34e4
81.81
  • 81.81
  • 81.81
  • 68.40
  • 67.63
  • 58.89
  • 54.97
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000037Larval:Day 5
5.60e3
  • 5.60e3
81.25
  • 81.25
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.54e3
  • 6.54e3
  • 7.03e3
  • 9.13e3
  • 9.67e3
  • 9.67e3
  • 1.03e4
  • 1.03e4
78.12
  • 78.12
  • 76.46
  • 69.43
  • 67.63
  • 67.63
  • 65.61
  • 65.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
6.64e3
  • 6.64e3
77.77
  • 77.77
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.03e3
  • 7.03e3
  • 7.03e3
  • 8.40e3
  • 8.79e3
76.46
  • 76.46
  • 76.46
  • 71.86
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.40e3
  • 7.40e3
75.21
  • 75.21
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
69.98
  • 69.98
  • 69.43
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.67e3
  • 9.67e3
  • 9.67e3
  • 9.67e3
67.63
  • 67.63
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.52
  • 61.52
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.12
  • 61.12
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.42e4
  • 1.42e4
52.43
  • 52.43
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.62e4
  • 1.62e4
45.66
  • 45.66
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.82e4
  • 1.82e4
39.21
  • 39.21
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.89
  • 38.89
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.64
  • 37.64
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.64
  • 25.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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