D. rerio Gene: gpn1 - ENSDARG00000043928 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043928
Namegpn1
DescriptionGPN-loop GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-154]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:100927
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.72e3
  • 2.72e3
  • 4.57e3
  • 4.80e3
  • 1.21e4
90.90
  • 90.90
  • 84.69
  • 83.92
  • 59.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.79e3
  • 2.79e3
  • 1.47e4
90.65
  • 90.65
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.96e3
  • 2.96e3
90.09
  • 90.09
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.55e3
  • 3.55e3
88.11
  • 88.11
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
88.07
  • 88.07
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
3.78e3
  • 3.78e3
  • 4.47e3
  • 5.22e3
  • 5.59e3
  • 5.70e3
  • 6.04e3
  • 6.77e3
  • 6.79e3
  • 7.09e3
  • 9.56e3
87.33
  • 87.33
  • 85.04
  • 82.52
  • 81.30
  • 80.92
  • 79.77
  • 77.33
  • 77.26
  • 76.26
  • 67.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.91e3
  • 3.91e3
86.89
  • 86.89
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.10e3
  • 4.10e3
  • 1.47e4
86.28
  • 86.28
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.47e3
  • 4.47e3
85.05
  • 85.05
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.58e3
  • 4.58e3
84.66
  • 84.66
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.62e3
  • 4.62e3
84.55
  • 84.55
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.78e3
  • 4.78e3
83.98
  • 83.98
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
  • 6.50e3
  • 7.37e3
  • 7.52e3
  • 7.67e3
  • 7.87e3
  • 8.26e3
  • 8.63e3
  • 8.75e3
  • 9.35e3
  • 9.46e3
  • 9.75e3
  • 1.06e4
  • 1.20e4
  • 1.49e4
  • 1.50e4
83.29
  • 83.29
  • 78.23
  • 75.31
  • 74.83
  • 74.34
  • 73.63
  • 72.34
  • 71.10
  • 70.71
  • 68.71
  • 68.32
  • 67.35
  • 64.62
  • 59.69
  • 50.20
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.41e3
  • 5.41e3
81.88
  • 81.88
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
5.43e3
  • 5.43e3
  • 7.31e3
  • 8.91e3
  • 9.40e3
  • 1.05e4
  • 1.10e4
81.81
  • 81.81
  • 75.53
  • 70.15
  • 68.53
  • 64.83
  • 63.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.50e3
  • 5.50e3
  • 5.84e3
81.57
  • 81.57
  • 80.43
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.22
  • 81.22
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.22
  • 81.22
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.05e3
  • 6.05e3
79.76
  • 79.76
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.12e3
  • 6.12e3
79.50
  • 79.50
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.13e3
  • 6.13e3
  • 6.74e3
79.46
  • 79.46
  • 77.44
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.14e3
  • 6.14e3
79.43
  • 79.43
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.15e3
  • 6.15e3
79.41
  • 79.41
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.36e3
  • 6.36e3
  • 8.21e3
78.72
  • 78.72
  • 72.52
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.40e3
  • 6.40e3
78.57
  • 78.57
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.76e3
  • 6.76e3
77.38
  • 77.38
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.79e3
  • 6.79e3
77.27
  • 77.27
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.80e3
  • 7.80e3
  • 8.78e3
  • 9.33e3
73.90
  • 73.90
  • 70.60
  • 68.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.98e3
  • 7.98e3
  • 9.72e3
73.29
  • 73.29
  • 67.44
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.16e3
  • 8.16e3
72.67
  • 72.67
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.58e3
  • 9.58e3
67.91
  • 67.91
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.94e3
  • 9.94e3
66.72
  • 66.72
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.01e4
  • 1.01e4
  • 1.06e4
  • 1.15e4
  • 1.16e4
  • 1.20e4
66.24
  • 66.24
  • 64.54
  • 61.35
  • 61.04
  • 59.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species18 genesCompare expression
Bilateria23 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000043928.

Cross-references

EnsemblENSDARG00000043928 (gpn1)
ZFINZDB-GENE-040801-154 (gpn1)
EMBLBX294375
Uniprot/SPTREMBLF1R8Z3, F1R8Z3_DANRE

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