D. rerio Gene: rpf2 - ENSDARG00000043960 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043960
Namerpf2
Descriptionribosome production factor 2 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2501]
OrganismDanio rerio (zebrafish)
Synonym(s)bxdc1, ik:tdsubc_1a3, wu:fe17d08, wu:fj16d06, xx:tdsubc_1a3, zgc:77150
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.40e3
  • 1.40e3
  • 2.17e3
  • 3.83e3
  • 3.92e3
  • 3.93e3
  • 6.46e3
95.31
  • 95.31
  • 92.73
  • 87.16
  • 86.86
  • 86.86
  • 78.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.74e3
  • 1.74e3
  • 2.75e3
  • 6.07e3
  • 6.62e3
  • 6.67e3
94.19
  • 94.19
  • 90.78
  • 79.66
  • 77.85
  • 77.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.77e3
  • 1.77e3
  • 1.24e4
94.09
  • 94.09
  • 58.58
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.41e3
  • 2.41e3
91.94
  • 91.94
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
2.58e3
  • 2.58e3
  • 2.64e3
  • 2.86e3
  • 3.42e3
  • 4.12e3
  • 4.51e3
  • 5.55e3
  • 5.65e3
  • 8.56e3
  • 1.41e4
91.37
  • 91.37
  • 91.18
  • 90.42
  • 88.54
  • 86.20
  • 84.90
  • 81.42
  • 81.08
  • 71.34
  • 52.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
2.77e3
  • 2.77e3
  • 1.21e4
  • 1.22e4
90.72
  • 90.72
  • 59.50
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.05e3
  • 3.05e3
  • 1.41e4
89.79
  • 89.79
  • 52.84
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.40e3
  • 3.40e3
88.63
  • 88.63
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.41e3
  • 3.41e3
88.60
  • 88.60
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.53e3
  • 3.53e3
88.17
  • 88.17
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.65e3
  • 3.65e3
87.78
  • 87.78
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.65e3
  • 3.65e3
87.78
  • 87.78
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.79e3
  • 3.79e3
87.33
  • 87.33
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
87.31
  • 87.31
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
87.27
  • 87.27
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
3.84e3
  • 3.84e3
  • 7.75e3
  • 1.21e4
87.13
  • 87.13
  • 74.04
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
87.10
  • 87.10
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.13e3
  • 4.13e3
  • 4.77e3
  • 4.81e3
  • 6.33e3
  • 6.41e3
  • 6.94e3
  • 7.03e3
  • 7.91e3
  • 8.84e3
  • 8.99e3
  • 1.07e4
  • 1.09e4
  • 1.11e4
  • 1.20e4
  • 1.21e4
  • 1.25e4
  • 1.41e4
  • 1.47e4
  • 1.50e4
86.17
  • 86.17
  • 84.04
  • 83.88
  • 78.82
  • 78.55
  • 76.76
  • 76.46
  • 73.52
  • 70.40
  • 69.90
  • 64.31
  • 63.39
  • 62.86
  • 59.72
  • 59.58
  • 58.11
  • 52.63
  • 50.68
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.14e3
  • 4.14e3
86.13
  • 86.13
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.65e3
  • 4.65e3
84.43
  • 84.43
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.66e3
  • 4.66e3
84.41
  • 84.41
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.88e3
  • 4.88e3
  • 1.29e4
83.65
  • 83.65
  • 56.66
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.64e3
  • 5.64e3
81.11
  • 81.11
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.02e3
  • 6.02e3
79.84
  • 79.84
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.94e3
  • 6.94e3
  • 7.26e3
76.77
  • 76.77
  • 75.71
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.27e3
  • 7.27e3
  • 7.74e3
75.65
  • 75.65
  • 74.10
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.65e3
  • 7.65e3
  • 9.98e3
  • 1.16e4
74.39
  • 74.39
  • 66.60
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.24e3
  • 8.24e3
  • 8.31e3
72.42
  • 72.42
  • 72.17
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.23e3
  • 9.23e3
69.09
  • 69.09
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.60e3
  • 9.60e3
  • 9.60e3
  • 1.03e4
67.85
  • 67.85
  • 67.85
  • 65.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.84e3
  • 9.84e3
67.07
  • 67.07
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.45
  • 66.45
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
  • 1.17e4
  • 1.24e4
  • 1.26e4
65.62
  • 65.62
  • 60.67
  • 58.45
  • 57.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.10e4
  • 1.10e4
  • 1.17e4
  • 1.22e4
  • 1.24e4
63.32
  • 63.32
  • 60.70
  • 59.08
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.17e4
  • 1.26e4
  • 1.28e4
  • 1.45e4
62.48
  • 62.48
  • 60.70
  • 57.68
  • 57.13
  • 51.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species19 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000043960.

Cross-references

EnsemblENSDARG00000043960 (rpf2)
ZFINZDB-GENE-040426-2501 (rpf2)
EMBLBC065672, BX511077
Uniprot/SPTREMBLQ6P0C5, Q6P0C5_DANRE

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