D. rerio Gene: tube1 - ENSDARG00000043982 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000043982
Nametube1
Descriptiontubulin, epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1174]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:63582
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.48e3
  • 9.48e3
68.27
  • 68.27
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.01e4
  • 1.01e4
  • 1.25e4
66.17
  • 66.17
  • 58.21
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.35
  • 60.35
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.31e4
  • 1.31e4
  • 1.41e4
56.19
  • 56.19
  • 52.82
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
  • 1.53e4
  • 1.60e4
  • 2.11e4
  • 2.17e4
53.04
  • 53.04
  • 48.79
  • 46.30
  • 29.35
  • 27.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.73e4
  • 1.73e4
  • 2.02e4
42.18
  • 42.18
  • 32.20
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.16
  • 42.16
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.75e4
  • 1.75e4
41.27
  • 41.27
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.78e4
  • 1.78e4
40.43
  • 40.43
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.14
  • 37.14
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.95
  • 35.95
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.29
  • 30.29
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.99
  • 23.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000043982 (tube1)
ZFINZDB-GENE-040426-1174 (tube1)
EMBLAL954744
Uniprot/SPTREMBLQ5SNS3, Q5SNS3_DANRE

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