D. rerio Gene: loxl2a - ENSDARG00000044010 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044010
Nameloxl2a
Descriptionlysyl oxidase-like 2a [Source:ZFIN;Acc:ZDB-GENE-070818-1]
OrganismDanio rerio (zebrafish)
Synonym(s)a6mh30

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.20
  • 93.20
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.99e3
  • 2.99e3
90.01
  • 90.01
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.01e3
  • 4.01e3
86.56
  • 86.56
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.05e3
  • 4.05e3
86.43
  • 86.43
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.91e3
  • 4.91e3
83.56
  • 83.56
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.00e3
  • 5.00e3
83.25
  • 83.25
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
6.46e3
  • 6.46e3
  • 6.83e3
  • 8.70e3
  • 9.11e3
  • 1.24e4
78.38
  • 78.38
  • 77.12
  • 70.87
  • 69.49
  • 58.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.66e3
  • 6.66e3
  • 7.50e3
77.69
  • 77.69
  • 74.88
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.32e3
  • 7.32e3
75.48
  • 75.48
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.43e3
  • 7.43e3
75.13
  • 75.13
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.45e3
  • 7.45e3
  • 1.01e4
75.04
  • 75.04
  • 66.21
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
74.98
  • 74.98
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.92e3
  • 8.92e3
70.13
  • 70.13
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.19e3
  • 9.19e3
69.24
  • 69.24
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.10
  • 65.10
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.24
  • 60.24
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.37
  • 58.37
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000028Segmentation:26+ somites
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0014907intersomitic vessel
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
  • 1.49e4
54.99
  • 54.99
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.44e4
  • 1.44e4
51.88
  • 51.88
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.67
  • 50.67
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.51e4
  • 1.51e4
49.27
  • 49.27
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.52e4
  • 1.52e4
49.18
  • 49.18
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.60e4
  • 1.60e4
46.28
  • 46.28
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.17
  • 44.17
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.47
  • 32.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX294119, EF030481
EnsemblENSDARG00000044010 (loxl2a)
Uniprot/SPTREMBLA0A0H2UKE3, A0A0H2UKE3_DANRE
Uniprot/SWISSPROTF1QQC3, LOL2A_DANRE
ZFINZDB-GENE-070818-1 (loxl2a)

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