D. rerio Gene: prnpb - ENSDARG00000044048 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044048
Nameprnpb
Descriptionprion protein b [Source:ZFIN;Acc:ZDB-GENE-041221-2]
OrganismDanio rerio (zebrafish)
Synonym(s)prnprs1, prp-1, prp1, stprp-1, zgc:123004
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.98e3
  • 3.98e3
86.66
  • 86.66
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000009Blastula:256-cell
  • UBERON:0000066fully formed stage
6.79e3
  • 6.79e3
  • 1.49e4
77.27
  • 77.27
  • 50.25
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.64
  • 62.64
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.20e4
  • 1.20e4
  • 1.89e4
59.76
  • 59.76
  • 36.62
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.49
  • 57.49
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000035Larval:Protruding-mouth
1.39e4
  • 1.39e4
  • 1.49e4
  • 1.49e4
53.55
  • 53.55
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.73
  • 47.73
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.69
  • 44.69
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.85
  • 43.85
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.73e4
  • 1.73e4
  • 2.12e4
41.95
  • 41.95
  • 29.03
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.78e4
  • 1.78e4
  • 2.03e4
40.28
  • 40.28
  • 32.00
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.93
  • 39.93
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.88
  • 39.88
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.00
  • 39.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.62
  • 32.62
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
30.11
  • 30.11
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.17
  • 29.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000044048.

Cross-references

EnsemblENSDARG00000044048 (prnpb)
ZFINZDB-GENE-041221-2 (prnpb)
EMBLBX548043
Uniprot/SPTREMBLF1QX09, F1QX09_DANRE

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