D. rerio Gene: smc5 - ENSDARG00000044282 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044282
Namesmc5
Descriptionstructural maintenance of chromosomes 5 [Source:ZFIN;Acc:ZDB-GENE-061013-288]
OrganismDanio rerio (zebrafish)
Synonym(s)pufa, pum3, wu:fb70d10, wu:fi47h05, zgc:152845, zgc:66377

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.91e3
  • 1.91e3
  • 1.50e4
93.60
  • 93.60
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.52e3
  • 2.52e3
91.56
  • 91.56
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.50
  • 91.50
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.57e3
  • 3.57e3
88.06
  • 88.06
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.93e3
  • 3.93e3
86.84
  • 86.84
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
4.05e3
  • 4.05e3
  • 4.11e3
  • 5.72e3
  • 6.87e3
  • 7.05e3
86.43
  • 86.43
  • 86.23
  • 80.86
  • 77.00
  • 76.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
4.27e3
  • 4.27e3
  • 7.51e3
  • 7.63e3
  • 7.86e3
  • 8.03e3
  • 8.06e3
  • 8.17e3
  • 8.63e3
  • 9.31e3
  • 9.68e3
  • 1.01e4
  • 1.02e4
  • 1.05e4
  • 1.07e4
  • 1.16e4
  • 1.43e4
  • 1.47e4
  • 1.49e4
85.71
  • 85.71
  • 74.86
  • 74.46
  • 73.69
  • 73.12
  • 73.02
  • 72.65
  • 71.10
  • 68.84
  • 67.59
  • 66.28
  • 65.74
  • 64.74
  • 64.07
  • 61.26
  • 51.99
  • 50.90
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.31e3
  • 4.31e3
85.57
  • 85.57
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.99e3
  • 4.99e3
83.31
  • 83.31
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.03e3
  • 5.03e3
83.17
  • 83.17
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.13e3
  • 5.13e3
82.81
  • 82.81
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.20e3
  • 5.20e3
82.58
  • 82.58
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.23e3
  • 5.23e3
82.48
  • 82.48
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
82.28
  • 82.28
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.49e3
  • 5.49e3
  • 5.89e3
  • 7.13e3
  • 7.36e3
  • 7.89e3
  • 8.23e3
  • 8.94e3
  • 9.35e3
  • 9.36e3
  • 1.20e4
81.63
  • 81.63
  • 80.28
  • 76.14
  • 75.35
  • 73.59
  • 72.44
  • 70.06
  • 68.70
  • 68.66
  • 59.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
5.57e3
  • 5.57e3
  • 5.59e3
  • 6.81e3
  • 8.22e3
  • 8.26e3
  • 8.41e3
81.35
  • 81.35
  • 81.27
  • 77.19
  • 72.47
  • 72.36
  • 71.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.63e3
  • 5.63e3
81.15
  • 81.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.82e3
  • 5.82e3
80.50
  • 80.50
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.35e3
  • 6.35e3
  • 8.07e3
78.73
  • 78.73
  • 72.98
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.87e3
  • 6.87e3
77.01
  • 77.01
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.92e3
  • 6.92e3
76.82
  • 76.82
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.98e3
  • 6.98e3
  • 8.47e3
76.63
  • 76.63
  • 71.63
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.59e3
  • 7.59e3
74.58
  • 74.58
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.62e3
  • 7.62e3
74.48
  • 74.48
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.98e3
  • 7.98e3
  • 9.28e3
73.29
  • 73.29
  • 68.94
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.37e3
  • 8.37e3
  • 9.34e3
  • 9.47e3
  • 1.01e4
71.98
  • 71.98
  • 68.73
  • 68.29
  • 66.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.60
  • 70.60
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.12e3
  • 9.12e3
69.45
  • 69.45
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.37e3
  • 9.37e3
68.64
  • 68.64
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.48e3
  • 9.48e3
68.26
  • 68.26
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
  • 1.06e4
67.15
  • 67.15
  • 64.63
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.03e4
  • 1.03e4
  • 1.07e4
  • 1.28e4
65.65
  • 65.65
  • 64.30
  • 57.16
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

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