D. rerio Gene: prrc1 - ENSDARG00000044304 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044304
Nameprrc1
Descriptionproline-rich coiled-coil 1 [Source:ZFIN;Acc:ZDB-GENE-041024-9]
OrganismDanio rerio (zebrafish)
Synonym(s)a5lid3, fi37a08, id:ibd5136, misty somites, mys, sag20, t2gtl20, wu:fi37a08, zgc:103484

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.08e3
  • 1.08e3
  • 1.44e3
  • 2.62e3
  • 2.96e3
  • 3.45e3
  • 4.44e3
96.39
  • 96.39
  • 95.17
  • 91.22
  • 90.08
  • 88.46
  • 85.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.09e3
  • 1.09e3
  • 1.44e3
  • 1.65e3
  • 3.40e3
  • 3.73e3
96.35
  • 96.35
  • 95.18
  • 94.47
  • 88.63
  • 87.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.89e3
  • 1.89e3
  • 4.75e3
93.67
  • 93.67
  • 84.09
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.12e3
  • 2.12e3
  • 1.43e4
92.91
  • 92.91
  • 52.10
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.52e3
  • 2.52e3
91.57
  • 91.57
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.53e3
  • 2.53e3
91.54
  • 91.54
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
2.69e3
  • 2.69e3
  • 4.50e3
  • 4.95e3
  • 5.14e3
  • 5.21e3
  • 5.27e3
  • 5.62e3
  • 7.06e3
  • 7.43e3
  • 7.55e3
  • 8.14e3
  • 8.20e3
  • 1.17e4
  • 1.24e4
  • 1.38e4
  • 1.39e4
  • 1.49e4
90.99
  • 90.99
  • 84.93
  • 83.41
  • 82.78
  • 82.56
  • 82.37
  • 81.19
  • 76.36
  • 75.11
  • 74.71
  • 72.76
  • 72.56
  • 60.74
  • 58.61
  • 53.74
  • 53.44
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.86e3
  • 2.86e3
90.44
  • 90.44
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.99e3
  • 2.99e3
  • 3.24e3
  • 3.32e3
  • 3.42e3
  • 3.51e3
  • 3.85e3
  • 4.62e3
  • 4.89e3
  • 5.66e3
  • 9.96e3
89.99
  • 89.99
  • 89.17
  • 88.89
  • 88.56
  • 88.24
  • 87.12
  • 84.55
  • 83.63
  • 81.04
  • 66.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.17e3
  • 3.17e3
89.39
  • 89.39
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.25e3
  • 3.25e3
89.12
  • 89.12
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.28e3
  • 3.28e3
89.01
  • 89.01
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.84
  • 88.84
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
3.55e3
  • 3.55e3
  • 1.34e4
88.13
  • 88.13
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.91e3
  • 3.91e3
86.92
  • 86.92
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.96e3
  • 3.96e3
86.74
  • 86.74
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.29e3
  • 4.29e3
85.64
  • 85.64
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
85.06
  • 85.06
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.82e3
  • 4.82e3
  • 6.61e3
83.87
  • 83.87
  • 77.88
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.92e3
  • 4.92e3
83.54
  • 83.54
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.15
  • 83.15
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.05e3
  • 5.05e3
83.08
  • 83.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.07e3
  • 5.07e3
83.02
  • 83.02
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
  • 7.83e3
  • 8.82e3
81.68
  • 81.68
  • 73.79
  • 70.48
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.50e3
  • 5.50e3
81.58
  • 81.58
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.98e3
  • 5.98e3
79.97
  • 79.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.17e3
  • 6.17e3
  • 1.47e4
79.33
  • 79.33
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.25e3
  • 6.25e3
79.07
  • 79.07
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.53
  • 78.53
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
6.44e3
  • 6.44e3
  • 8.80e3
  • 8.81e3
78.43
  • 78.43
  • 70.53
  • 70.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
  • 7.53e3
77.28
  • 77.28
  • 74.79
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.79e3
  • 6.79e3
77.27
  • 77.27
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.65e3
  • 7.65e3
  • 9.59e3
74.39
  • 74.39
  • 67.87
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.61e3
  • 8.61e3
71.16
  • 71.16
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
1.22e4
  • 1.22e4
  • 1.32e4
  • 1.34e4
  • 1.34e4
  • 1.36e4
59.06
  • 59.06
  • 55.97
  • 54.97
  • 54.97
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.25e4
  • 1.25e4
  • 1.33e4
58.31
  • 58.31
  • 55.53
AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
1.33e4
  • 1.33e4
  • 1.33e4
  • 1.33e4
  • 1.41e4
  • 1.41e4
  • 1.41e4
55.53
  • 55.53
  • 55.53
  • 55.53
  • 52.92
  • 52.92
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAB307684, BC083401
EnsemblENSDARG00000044304 (prrc1)
Uniprot/SWISSPROTPRRC1_DANRE, Q5XJA3
ZFINZDB-GENE-041024-9 (prrc1)

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