D. rerio Gene: atg4c - ENSDARG00000044373 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044373
Nameatg4c
Descriptionautophagy related 4C, cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-040625-84]
OrganismDanio rerio (zebrafish)
Synonym(s)apg4c, atg4cl, wu:fc56g07, zgc:86888

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.81e3
  • 4.81e3
83.88
  • 83.88
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
83.30
  • 83.30
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.54e3
  • 5.54e3
  • 9.53e3
81.46
  • 81.46
  • 68.08
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.80e3
  • 5.80e3
80.57
  • 80.57
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
6.12e3
  • 6.12e3
  • 6.97e3
  • 7.45e3
  • 7.90e3
  • 9.19e3
  • 1.21e4
79.52
  • 79.52
  • 76.66
  • 75.05
  • 73.56
  • 69.22
  • 59.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.14e3
  • 6.14e3
79.44
  • 79.44
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.36e3
  • 6.36e3
78.70
  • 78.70
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.46e3
  • 6.46e3
78.37
  • 78.37
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.88e3
  • 6.88e3
76.97
  • 76.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.15e3
  • 7.15e3
76.07
  • 76.07
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.41e3
  • 7.41e3
75.20
  • 75.20
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
7.43e3
  • 7.43e3
  • 1.11e4
  • 1.15e4
  • 1.51e4
  • 1.67e4
75.13
  • 75.13
  • 62.76
  • 61.56
  • 49.54
  • 44.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
7.46e3
  • 7.46e3
  • 8.21e3
  • 9.18e3
  • 9.18e3
  • 9.29e3
  • 9.80e3
  • 1.16e4
  • 1.17e4
  • 1.29e4
  • 1.40e4
75.02
  • 75.02
  • 72.50
  • 69.28
  • 69.27
  • 68.91
  • 67.20
  • 61.08
  • 60.95
  • 56.83
  • 53.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.69e3
  • 7.69e3
74.25
  • 74.25
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.92e3
  • 7.92e3
73.47
  • 73.47
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.05e3
  • 8.05e3
73.05
  • 73.05
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.08e3
  • 8.08e3
  • 8.84e3
  • 1.06e4
  • 1.25e4
72.96
  • 72.96
  • 70.40
  • 64.57
  • 57.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.90e3
  • 8.90e3
70.19
  • 70.19
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.24e3
  • 9.24e3
69.08
  • 69.08
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.29e3
  • 9.29e3
68.91
  • 68.91
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.33e3
  • 9.33e3
68.77
  • 68.77
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.42e3
  • 9.42e3
  • 1.38e4
68.46
  • 68.46
  • 53.63
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.56e3
  • 9.56e3
68.00
  • 68.00
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.00e4
  • 1.00e4
  • 1.12e4
66.43
  • 66.43
  • 62.58
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 1.14e4
65.29
  • 65.29
  • 61.72
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.08e4
  • 1.08e4
63.89
  • 63.89
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
1.13e4
  • 1.13e4
  • 1.13e4
  • 1.15e4
  • 1.17e4
  • 1.20e4
  • 1.30e4
  • 1.37e4
  • 1.38e4
  • 1.44e4
  • 1.50e4
  • 1.51e4
  • 1.58e4
  • 1.59e4
  • 1.63e4
62.23
  • 62.23
  • 62.04
  • 61.51
  • 60.89
  • 59.86
  • 56.50
  • 54.09
  • 53.77
  • 51.93
  • 49.71
  • 49.54
  • 47.15
  • 46.76
  • 45.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.55
  • 60.55
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.20e4
  • 1.20e4
  • 1.31e4
  • 1.41e4
59.85
  • 59.85
  • 56.23
  • 52.62
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC071514, BX936431
EnsemblENSDARG00000044373 (atg4c)
Uniprot/SPTREMBLQ6IQ96, Q6IQ96_DANRE
ZFINZDB-GENE-040625-84 (atg4c)

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