D. rerio Gene: nop16 - ENSDARG00000044402 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044402
Namenop16
DescriptionNOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:92910
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
764
  • 764
  • 777
  • 816
  • 851
  • 872
  • 1.07e3
  • 2.22e3
  • 2.78e3
  • 2.93e3
  • 3.05e3
  • 3.98e3
  • 4.67e3
  • 4.98e3
  • 5.31e3
  • 6.15e3
  • 7.03e3
  • 7.08e3
  • 8.49e3
97.44
  • 97.44
  • 97.40
  • 97.27
  • 97.15
  • 97.08
  • 96.43
  • 92.56
  • 90.69
  • 90.18
  • 89.79
  • 86.68
  • 84.37
  • 83.33
  • 82.21
  • 79.40
  • 76.46
  • 76.30
  • 71.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
822
  • 822
97.25
  • 97.25
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
903
  • 903
  • 1.13e3
  • 1.23e3
  • 1.67e3
  • 2.42e3
  • 3.09e3
96.98
  • 96.98
  • 96.21
  • 95.89
  • 94.40
  • 91.91
  • 89.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.16e3
  • 1.16e3
96.11
  • 96.11
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.20e3
  • 1.20e3
  • 1.30e3
  • 1.33e3
  • 1.52e3
  • 1.78e3
  • 1.85e3
  • 2.47e3
  • 2.66e3
  • 3.77e3
  • 4.06e3
95.98
  • 95.98
  • 95.66
  • 95.53
  • 94.90
  • 94.05
  • 93.80
  • 91.73
  • 91.08
  • 87.37
  • 86.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.22e3
  • 1.22e3
95.91
  • 95.91
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.30e3
  • 1.30e3
95.65
  • 95.65
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
1.33e3
  • 1.33e3
  • 1.40e3
  • 2.20e3
  • 2.48e3
  • 2.83e3
95.56
  • 95.56
  • 95.30
  • 92.63
  • 91.69
  • 90.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.54e3
  • 1.54e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.62e3
  • 1.62e3
94.57
  • 94.57
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.63e3
  • 1.63e3
  • 1.12e4
  • 1.12e4
  • 1.18e4
  • 1.24e4
94.54
  • 94.54
  • 62.48
  • 62.48
  • 60.39
  • 58.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.81e3
  • 1.81e3
93.94
  • 93.94
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.53
  • 93.53
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
92.58
  • 92.58
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
2.25e3
  • 2.25e3
  • 3.55e3
  • 7.02e3
  • 1.17e4
  • 1.27e4
  • 1.32e4
92.48
  • 92.48
  • 88.13
  • 76.48
  • 60.84
  • 57.47
  • 55.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.34e3
  • 2.34e3
  • 4.68e3
92.16
  • 92.16
  • 84.34
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.44e3
  • 2.44e3
91.85
  • 91.85
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.09e3
  • 3.09e3
  • 1.10e4
  • 1.12e4
  • 1.21e4
  • 1.28e4
89.66
  • 89.66
  • 63.32
  • 62.49
  • 59.36
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.09e3
  • 3.09e3
89.65
  • 89.65
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.46e3
  • 3.46e3
  • 4.77e3
88.41
  • 88.41
  • 84.04
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.64e3
  • 3.64e3
  • 5.19e3
87.82
  • 87.82
  • 82.63
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.88e3
  • 3.88e3
87.02
  • 87.02
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.05e3
  • 4.05e3
86.43
  • 86.43
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
86.25
  • 86.25
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.13e3
  • 4.13e3
  • 5.21e3
86.18
  • 86.18
  • 82.56
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.14e3
  • 4.14e3
  • 5.51e3
  • 6.16e3
86.15
  • 86.15
  • 81.56
  • 79.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.90
  • 84.90
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.58e3
  • 4.58e3
84.68
  • 84.68
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
84.15
  • 84.15
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.67e3
  • 5.67e3
81.01
  • 81.01
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.48e3
  • 6.48e3
78.31
  • 78.31
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.93e3
  • 7.93e3
73.43
  • 73.43
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.24
  • 64.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000044402.

Cross-references

EnsemblENSDARG00000044402 (nop16)
ZFINZDB-GENE-040718-267 (nop16)
EMBLBC076362
Uniprot/SWISSPROTNOP16_DANRE, Q6DGI3

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