D. rerio Gene: csmd1a - ENSDARG00000044414 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044414
Namecsmd1a
DescriptionCUB and Sushi multiple domains 1a [Source:ZFIN;Acc:ZDB-GENE-050417-402]
OrganismDanio rerio (zebrafish)
Synonym(s)csmd1, zgc:110146

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.86e3
  • 6.86e3
77.02
  • 77.02
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.31e4
  • 1.34e4
  • 1.34e4
  • 1.49e4
  • 1.85e4
59.08
  • 59.08
  • 56.24
  • 54.99
  • 54.99
  • 49.99
  • 38.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.26e4
  • 1.26e4
  • 1.28e4
  • 1.34e4
  • 1.39e4
  • 1.39e4
  • 1.41e4
  • 1.41e4
57.68
  • 57.68
  • 57.13
  • 55.24
  • 53.55
  • 53.31
  • 52.92
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.76
  • 45.76
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.70e4
  • 1.70e4
  • 2.26e4
43.11
  • 43.11
  • 24.26
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.76
  • 38.76
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.15e4
  • 2.15e4
  • 2.38e4
27.88
  • 27.88
  • 20.22
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000044414 (csmd1a)
Uniprot/SPTREMBLF1QHZ0, F1QHZ0_DANRE
ZFINZDB-GENE-050417-402 (csmd1a)

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