D. rerio Gene: gfi1ab - ENSDARG00000044457 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044457
Namegfi1ab
Descriptiongrowth factor independent 1A transcription repressor b [Source:ZFIN;Acc:ZDB-GENE-040116-8]
OrganismDanio rerio (zebrafish)
Synonym(s)gfi1, gfi1.2, gfi1b

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0015241parapineal organ
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000034Hatching:Pec-fin
3.73e3
  • 3.73e3
  • 3.73e3
  • 4.98e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
87.50
  • 87.50
  • 87.50
  • 83.34
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.03e3
  • 4.03e3
86.51
  • 86.51
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.64e3
  • 6.64e3
77.76
  • 77.76
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.13e3
  • 1.08e4
69.99
  • 69.99
  • 69.43
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.05e4
  • 1.05e4
64.78
  • 64.78
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.25e4
  • 1.25e4
58.22
  • 58.22
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.37e4
  • 1.37e4
  • 1.42e4
  • 1.49e4
54.15
  • 54.15
  • 52.60
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
53.97
  • 53.97
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.90
  • 53.90
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.39e4
  • 1.39e4
  • 1.64e4
  • 1.66e4
  • 1.71e4
  • 1.87e4
53.56
  • 53.56
  • 45.19
  • 44.41
  • 42.61
  • 37.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.48e4
  • 1.48e4
  • 1.65e4
50.51
  • 50.51
  • 44.82
AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0018549ventral wall of dorsal aorta
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:2005039anterior lateral mesoderm
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
  • 2.07e4
47.66
  • 47.66
  • 30.66
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.17
  • 47.17
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
  • 1.96e4
46.73
  • 46.73
  • 34.33
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.54
  • 43.54
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.45
  • 43.45
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.00
  • 43.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.77
  • 42.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.45
  • 39.45
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.36
  • 36.36
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.63
  • 29.63
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
26.89
  • 26.89
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
25.06
  • 25.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000044457 (gfi1ab)
ZFINZDB-GENE-040116-8 (gfi1ab)
EMBLBX004878
Uniprot/SPTREMBLF1QKD4, F1QKD4_DANRE

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