Gene: sall4 - ENSDARG00000044485 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000044485
Name	sall4
Description	spalt-like transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-060328-2]
Organism	Danio rerio (zebrafish)
Synonym(s)	cb372, cb614, ik:tdsubc_2c1, sb:cb372, sb:cb614, wu:fa01g03, xx:tdsubc_2c1
Orthologs(s)	18 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000307	blastula	[+] 5 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell ZFS:0000016Blastula:30%-epiboly ZFS:0000014Blastula:Sphere ZFS:0000009Blastula:256-cell	81.5 81.5 260 9.41e3 1.23e4 1.24e4	99.73 99.73 99.13 68.48 58.86 58.50	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 6 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud ZFS:0000020Gastrula:75%-epiboly ZFS:0000017Gastrula:50%-epiboly ZFS:0000021Gastrula:90%-epiboly UBERON:0000109gastrula stage	328 328 2.34e3 6.01e3 1.06e4 1.14e4 1.33e4	98.91 98.91 92.18 79.89 64.45 61.99 55.34	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	764 764	97.44 97.44	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	2.45e3 2.45e3	91.80 91.80	AEIR AEIR
UBERON:0005426	lens vesicle	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	2.64e3 2.64e3 2.80e3 4.48e3	91.17 91.17 90.62 84.99	AEIR AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 10 stages UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000025Segmentation:10-13 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 ZFS:0000031Pharyngula:Prim-25 ZFS:0000030Pharyngula:Prim-15	2.93e3 2.93e3 3.42e3 6.24e3 9.78e3 1.00e4 1.10e4 1.34e4 1.69e4 1.78e4 1.81e4	90.18 90.18 88.56 79.10 67.25 66.47 63.31 55.11 43.27 40.54 39.27	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0007269	pectoral appendage musculature	[+] 4 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec	3.73e3 3.73e3 3.73e3 7.86e3 7.86e3	87.50 87.50 87.50 73.67 73.67	AEIR AEIR AEIR AEIR AEIR
UBERON:0000965	lens of camera-type eye	[+] 4 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec	3.93e3 3.93e3 4.48e3 8.54e3 8.96e3	86.84 86.84 84.99 71.42 69.99	AEIR AEIR AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	4.04e3 4.04e3	86.46 86.46	AEIR AEIR
UBERON:0003051	ear vesicle	[+] 5 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	4.48e3 4.48e3 4.75e3 9.10e3 9.96e3 9.96e3	84.99 84.99 84.08 69.55 66.65 66.64	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000465	material anatomical entity	[+] 6 stages ZFS:0000018Gastrula:Germ-ring ZFS:0000017Gastrula:50%-epiboly ZFS:0000022Gastrula:Bud ZFS:0000020Gastrula:75%-epiboly ZFS:0000021Gastrula:90%-epiboly ZFS:0000019Gastrula:Shield	4.60e3 4.60e3 7.03e3 7.12e3 7.47e3 7.47e3 7.47e3	84.61 84.61 76.46 76.18 74.99 74.99 74.99	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001943	midbrain tegmentum	[+] 5 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites	4.67e3 4.67e3 5.27e3 9.13e3 9.67e3 9.67e3	84.37 84.37 82.35 69.43 67.63 67.63	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002240	spinal cord	[+] 5 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	4.75e3 4.75e3 4.75e3 5.23e3 5.23e3 5.87e3	84.08 84.08 84.08 82.49 82.49 80.34	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0005419	pectoral appendage bud	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites	4.98e3 4.98e3 5.81e3 5.81e3	83.32 83.32 80.55 80.55	AEIR AEIR AEIR AEIR
UBERON:0001049	neural tube	[+] 4 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000026Segmentation:14-19 somites	5.20e3 5.20e3 5.23e3 5.23e3 5.98e3	82.60 82.60 82.49 82.49 79.99	AEIR AEIR AEIR AEIR AEIR
UBERON:0003069	otic placode	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	5.50e3 5.50e3	81.57 81.57	AEIR AEIR
UBERON:0005886	post-hyoid pharyngeal arch skeleton	[+] 7 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec	5.50e3 5.50e3 5.50e3 5.98e3 5.98e3 6.40e3 8.79e3 8.79e3	81.57 81.57 81.57 79.99 79.99 78.56 70.57 70.57	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002028	hindbrain	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	5.98e3 5.98e3	79.99 79.99	AEIR AEIR
UBERON:0002107	liver	[+] 3 stages ZFS:0000031Pharyngula:Prim-25 ZFS:0000030Pharyngula:Prim-15 UBERON:0000066fully formed stage	6.22e3 6.22e3 6.97e3 1.88e4	79.16 79.16 76.66 37.14	AEIR AEIR AEIR AEIR
UBERON:0002533	post-anal tail bud	[+] 4 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000024Segmentation:5-9 somites	7.08e3 7.08e3 7.47e3 7.47e3 8.30e3	76.30 76.30 74.99 74.99 72.21	AEIR AEIR AEIR AEIR AEIR
UBERON:0003060	pronephric duct	[+] 5 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000027Segmentation:20-25 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000028Segmentation:26+ somites	7.47e3 7.47e3 7.47e3 7.47e3 7.47e3 7.86e3	74.99 74.99 74.99 74.99 74.99 73.67	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001905	pineal body	[+] 6 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000026Segmentation:14-19 somites	7.97e3 7.97e3 8.40e3 9.25e3 9.34e3 9.96e3 1.07e4	73.32 73.32 71.86 69.03 68.74 66.65 64.27	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001891	midbrain	[+] 5 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec	8.30e3 8.30e3 8.40e3 9.71e3 1.10e4 1.17e4	72.21 72.21 71.86 67.48 63.32 60.70	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0003055	periderm	[+] 3 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites	8.40e3 8.40e3 8.96e3 8.96e3	71.86 71.86 69.99 69.99	AEIR AEIR AEIR AEIR
UBERON:0001894	diencephalon	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	8.45e3 8.45e3 8.65e3 8.72e3	71.72 71.72 71.04 70.81	AEIR AEIR AEIR AEIR
UBERON:0001892	rhombomere	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	8.54e3 8.54e3	71.42 71.42	AEIR AEIR
UBERON:2000164	ventral mesenchyme	[+] 2 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	8.54e3 8.54e3 8.54e3	71.42 71.42 71.42	AEIR AEIR AEIR
UBERON:0000925	endoderm	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	8.71e3 8.71e3 9.19e3 9.60e3	70.82 70.82 69.22 67.85	AEIR AEIR AEIR AEIR
UBERON:2000083	ventral mesoderm	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	8.79e3 8.79e3	70.57 70.57	AEIR AEIR
UBERON:0002329	somite	[+] 4 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000026Segmentation:14-19 somites	8.96e3 8.96e3 8.96e3 9.96e3 1.19e4	69.98 69.98 69.98 66.64 60.31	AEIR AEIR AEIR AEIR AEIR
UBERON:0001945	superior colliculus	[+] 4 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec	9.13e3 9.13e3 9.13e3 1.02e4 1.05e4	69.43 69.43 69.43 65.77 64.69	AEIR AEIR AEIR AEIR AEIR
UBERON:0009614	hindbrain neural plate	[+] 3 stages ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000023Segmentation:1-4 somites	9.19e3 9.19e3 9.19e3 9.60e3	69.22 69.22 69.22 67.85	AEIR AEIR AEIR AEIR
UBERON:0010285	midbrain basal plate	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	9.67e3 9.67e3 9.67e3 9.67e3	67.63 67.63 67.63 67.63	AEIR AEIR AEIR AEIR
UBERON:2007025	midbrain neural keel	[+] 3 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites	9.96e3 9.96e3 9.96e3 9.96e3	66.66 66.66 66.66 66.66	AEIR AEIR AEIR AEIR
UBERON:2007045	midbrain hindbrain boundary neural keel	[+] 3 stages ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000023Segmentation:1-4 somites	9.96e3 9.96e3 1.03e4 1.07e4	66.66 66.66 65.37 64.27	AEIR AEIR AEIR AEIR
UBERON:0000948	heart	[+] 1 stage ZFS:0000036Larval:Day 4	1.03e4 1.03e4	65.37 65.37	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.11e4 1.11e4	62.92 62.92	AEIR AEIR
UBERON:0003934	mesenchyme pectoral fin	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.12e4 1.12e4	62.50 62.50	AEIR AEIR
UBERON:0007010	cleaving embryo	[+] 1 stage ZFS:0000005Cleavage:16-cell	1.15e4 1.15e4	61.47 61.47	AEIR AEIR
UBERON:0009620	tail bud paraxial mesoderm	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	1.22e4 1.22e4	59.13 59.13	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.28e4 1.28e4	57.25 57.25	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.32e4 1.32e4	55.76 55.76	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.43e4 1.43e4 1.50e4	52.09 52.09 49.70	AEIR AEIR AEIR
UBERON:0002199	integument	[+] 1 stage UBERON:0000066fully formed stage	1.46e4 1.46e4	51.09 51.09	AEIR AEIR
UBERON:0002531	paired fin bud	[+] 1 stage ZFS:0000028Segmentation:26+ somites	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0003413	pectoral appendage bud mesenchyme	[+] 1 stage ZFS:0000030Pharyngula:Prim-15	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.64e4 1.64e4	44.93 44.93	AEIR AEIR
UBERON:0000955	brain	[+] 2 stages ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage	1.76e4 1.76e4 1.77e4	40.98 40.98 40.65	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.85e4 1.85e4	38.10 38.10	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.85e4 1.85e4	37.94 37.94	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.87e4 1.87e4	37.37 37.37	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	2.01e4 2.01e4 2.25e4	32.79 32.79 24.59	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.33e4 2.33e4	22.00 22.00	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000101115 SALL4 ENSMUSG00000027547 Sall4 ENSPTRG00000013631 SALL4 ENSGGOG00000001832 SALL4 ENSMMUG00000003870 SALL4 ENSRNOG00000050035 Sall4 ENSBTAG00000003101 SALL4 ENSSSCG00000007479 SALL4 ENSECAG00000018533 SALL4 ENSOCUG00000011797 SALL4 ENSCAFG00000011738 ENSFCAG00000002822 SALL4 ENSCPOG00000010388 SALL4 ENSEEUG00000003649 SALL4 ENSOANG00000008667 SALL4 ENSGALG00000007834 SALL4 ENSACAG00000012748 SALL4 ENSXETG00000012326 sall4	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000044485.

Cross-references

Ensembl	ENSDARG00000044485 (sall4)
ZFIN	ZDB-GENE-060328-2 (sall4)
EMBL	CABZ01083758
Uniprot/SPTREMBL	F1QDF2, F1QDF2_DANRE