D. rerio Gene: sall4 - ENSDARG00000044485 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044485
Namesall4
Descriptionspalt-like transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-060328-2]
OrganismDanio rerio (zebrafish)
Synonym(s)cb372, cb614, ik:tdsubc_2c1, sb:cb372, sb:cb614, wu:fa01g03, xx:tdsubc_2c1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
81.5
  • 81.5
  • 260
  • 9.41e3
  • 1.23e4
  • 1.24e4
99.73
  • 99.73
  • 99.13
  • 68.48
  • 58.86
  • 58.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
328
  • 328
  • 2.34e3
  • 6.01e3
  • 1.06e4
  • 1.14e4
  • 1.33e4
98.91
  • 98.91
  • 92.18
  • 79.89
  • 64.45
  • 61.99
  • 55.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
764
  • 764
97.44
  • 97.44
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
91.80
  • 91.80
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
2.64e3
  • 2.64e3
  • 2.80e3
  • 4.48e3
91.17
  • 91.17
  • 90.62
  • 84.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
2.93e3
  • 2.93e3
  • 3.42e3
  • 6.24e3
  • 9.78e3
  • 1.00e4
  • 1.10e4
  • 1.34e4
  • 1.69e4
  • 1.78e4
  • 1.81e4
90.18
  • 90.18
  • 88.56
  • 79.10
  • 67.25
  • 66.47
  • 63.31
  • 55.11
  • 43.27
  • 40.54
  • 39.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.73e3
  • 3.73e3
  • 3.73e3
  • 7.86e3
  • 7.86e3
87.50
  • 87.50
  • 87.50
  • 73.67
  • 73.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.93e3
  • 3.93e3
  • 4.48e3
  • 8.54e3
  • 8.96e3
86.84
  • 86.84
  • 84.99
  • 71.42
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.04e3
  • 4.04e3
86.46
  • 86.46
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.48e3
  • 4.48e3
  • 4.75e3
  • 9.10e3
  • 9.96e3
  • 9.96e3
84.99
  • 84.99
  • 84.08
  • 69.55
  • 66.65
  • 66.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
4.60e3
  • 4.60e3
  • 7.03e3
  • 7.12e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
84.61
  • 84.61
  • 76.46
  • 76.18
  • 74.99
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
4.67e3
  • 4.67e3
  • 5.27e3
  • 9.13e3
  • 9.67e3
  • 9.67e3
84.37
  • 84.37
  • 82.35
  • 69.43
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.75e3
  • 4.75e3
  • 4.75e3
  • 5.23e3
  • 5.23e3
  • 5.87e3
84.08
  • 84.08
  • 84.08
  • 82.49
  • 82.49
  • 80.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
4.98e3
  • 4.98e3
  • 5.81e3
  • 5.81e3
83.32
  • 83.32
  • 80.55
  • 80.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
5.20e3
  • 5.20e3
  • 5.23e3
  • 5.23e3
  • 5.98e3
82.60
  • 82.60
  • 82.49
  • 82.49
  • 79.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
5.50e3
  • 5.50e3
81.57
  • 81.57
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.50e3
  • 5.50e3
  • 5.50e3
  • 5.98e3
  • 5.98e3
  • 6.40e3
  • 8.79e3
  • 8.79e3
81.57
  • 81.57
  • 81.57
  • 79.99
  • 79.99
  • 78.56
  • 70.57
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
5.98e3
  • 5.98e3
79.99
  • 79.99
AEIR
  • AEIR
UBERON:0002107liver
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
  • 6.97e3
  • 1.88e4
79.16
  • 79.16
  • 76.66
  • 37.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
7.08e3
  • 7.08e3
  • 7.47e3
  • 7.47e3
  • 8.30e3
76.30
  • 76.30
  • 74.99
  • 74.99
  • 72.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.86e3
74.99
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
7.97e3
  • 7.97e3
  • 8.40e3
  • 9.25e3
  • 9.34e3
  • 9.96e3
  • 1.07e4
73.32
  • 73.32
  • 71.86
  • 69.03
  • 68.74
  • 66.65
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.30e3
  • 8.30e3
  • 8.40e3
  • 9.71e3
  • 1.10e4
  • 1.17e4
72.21
  • 72.21
  • 71.86
  • 67.48
  • 63.32
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.40e3
  • 8.40e3
  • 8.96e3
  • 8.96e3
71.86
  • 71.86
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.45e3
  • 8.45e3
  • 8.65e3
  • 8.72e3
71.72
  • 71.72
  • 71.04
  • 70.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000026Segmentation:14-19 somites
8.54e3
  • 8.54e3
71.42
  • 71.42
AEIR
  • AEIR
UBERON:2000164ventral mesenchyme
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.54e3
  • 8.54e3
  • 8.54e3
71.42
  • 71.42
  • 71.42
AEIR
  • AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.71e3
  • 8.71e3
  • 9.19e3
  • 9.60e3
70.82
  • 70.82
  • 69.22
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
8.79e3
  • 8.79e3
70.57
  • 70.57
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
8.96e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 1.19e4
69.98
  • 69.98
  • 69.98
  • 66.64
  • 60.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.13e3
  • 9.13e3
  • 9.13e3
  • 1.02e4
  • 1.05e4
69.43
  • 69.43
  • 69.43
  • 65.77
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.19e3
  • 9.19e3
  • 9.19e3
  • 9.60e3
69.22
  • 69.22
  • 69.22
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.67e3
  • 9.67e3
  • 9.67e3
  • 9.67e3
67.63
  • 67.63
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
66.66
  • 66.66
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007045midbrain hindbrain boundary neural keel
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
66.66
  • 66.66
  • 65.37
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.03e4
  • 1.03e4
65.37
  • 65.37
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.92
  • 62.92
AEIR
  • AEIR
UBERON:0003934mesenchyme pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.15e4
  • 1.15e4
61.47
  • 61.47
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.22e4
  • 1.22e4
59.13
  • 59.13
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.25
  • 57.25
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.76
  • 55.76
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.43e4
  • 1.43e4
  • 1.50e4
52.09
  • 52.09
  • 49.70
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.09
  • 51.09
AEIR
  • AEIR
UBERON:0002531paired fin bud
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003413pectoral appendage bud mesenchyme
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
44.93
  • 44.93
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
  • 1.77e4
40.98
  • 40.98
  • 40.65
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.10
  • 38.10
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
37.94
  • 37.94
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.37
  • 37.37
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
  • 2.25e4
32.79
  • 32.79
  • 24.59
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.33e4
  • 2.33e4
22.00
  • 22.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCABZ01083758
EnsemblENSDARG00000044485 (sall4)
Uniprot/SPTREMBLF1QDF2, F1QDF2_DANRE
ZFINZDB-GENE-060328-2 (sall4)

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