Gene: viml - ENSDARG00000044501 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000044501
Name	viml
Description	vimentin like [Source:ZFIN;Acc:ZDB-GENE-040426-1743]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:73275
Orthologs(s)	18 orthologs
Paralog(s)	8 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	5.83e3 5.83e3	80.48 80.48	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage UBERON:0000066fully formed stage	6.94e3 6.94e3	76.76 76.76	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	8.19e3 8.19e3	72.59 72.59	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	8.54e3 8.54e3	71.39 71.39	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.12e4 1.12e4 1.90e4	62.45 62.45 36.28	AEIR AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.35e4 1.35e4	54.81 54.81	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.37e4 1.37e4	54.02 54.02	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.41e4 1.41e4	52.74 52.74	AEIR AEIR
UBERON:0000080	mesonephros	[+] 1 stage UBERON:0000066fully formed stage	1.44e4 1.44e4	51.94 51.94	AEIR AEIR
UBERON:0002199	integument	[+] 1 stage UBERON:0000066fully formed stage	1.45e4 1.45e4	51.48 51.48	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.48e4 1.48e4	50.53 50.53	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.93 49.93	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 7 stages UBERON:0000104life cycle UBERON:0000066fully formed stage ZFS:0000022Gastrula:Bud ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 ZFS:0000036Larval:Day 4	1.50e4 1.50e4 1.50e4 1.78e4 1.79e4 1.81e4 1.83e4 1.83e4	49.92 49.92 49.81 40.56 40.18 39.42 38.62 38.57	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.51e4 1.51e4	49.54 49.54	AEIR AEIR
UBERON:0002548	larva	[+] 3 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage ZFS:0000035Larval:Protruding-mouth	1.57e4 1.57e4 1.71e4 1.79e4	47.32 47.32 42.86 39.98	AEIR AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.60e4 1.60e4	46.26 46.26	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.61e4 1.61e4	46.05 46.05	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud UBERON:0000109gastrula stage	1.65e4 1.65e4 1.75e4	44.86 44.86 41.42	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.76e4 1.76e4	41.01 41.01	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.80e4 1.80e4	39.81 39.81	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage ZFS:0000036Larval:Day 4	1.82e4 1.82e4	39.06 39.06	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage	1.88e4 1.88e4 2.08e4 2.18e4 2.24e4 2.24e4	37.16 37.16 30.26 27.02 24.98 24.89	AEIR AEIR AEIR AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000026025 VIM ENSMUSG00000026728 Vim ENSPTRG00000002328 VIM ENSGGOG00000009576 VIM ENSMMUG00000003193 VIM ENSRNOG00000018087 Vim ENSBTAG00000018463 VIM ENSSSCG00000011033 VIM ENSECAG00000004216 VIM ENSOCUG00000009222 VIM ENSCAFG00000004529 VIM ENSFCAG00000013562 VIM ENSCPOG00000001054 Vim ENSEEUG00000004843 VIM ENSMODG00000009818 VIM ENSGALG00000008677 vimentin ENSACAG00000005142 VIM ENSXETG00000007462 vim	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000044501.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Clupeocephala	1 gene ENSDARG00000010008 vim	Compare expression	[+]
Chordata	8 genes ENSDARG00000005221 desmb ENSDARG00000010008 vim ENSDARG00000011862 inaa ENSDARG00000025301 gfap ENSDARG00000028306 prph ENSDARG00000053248 inab ENSDARG00000057881 si:dkey-33c12.3 ENSDARG00000058656 desma	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000044501.

Cross-references

Ensembl	ENSDARG00000044501 (viml)
ZFIN	ZDB-GENE-040426-1743 (viml)
EMBL	CU571088
Uniprot/SPTREMBL	F1QT60, F1QT60_DANRE