D. rerio Gene: rtn4a - ENSDARG00000044601 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044601
Namertn4a
Descriptionreticulon 4a [Source:ZFIN;Acc:ZDB-GENE-030710-1]
OrganismDanio rerio (zebrafish)
Synonym(s)nogo, nogo-b, rtn4, wu:fb17a02, wu:fb22f12, wu:fd61a07, zgc:92163

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
125
  • 125
  • 622
  • 707
  • 840
99.58
  • 99.58
  • 97.92
  • 97.64
  • 97.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
168
  • 168
99.44
  • 99.44
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
201
  • 201
99.33
  • 99.33
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
208
  • 208
  • 368
  • 428
  • 475
  • 504
  • 504
  • 540
  • 551
  • 624
  • 769
  • 878
  • 878
  • 899
  • 919
  • 1.16e3
  • 7.86e3
  • 1.11e4
  • 1.38e4
  • 1.49e4
99.31
  • 99.31
  • 98.77
  • 98.57
  • 98.41
  • 98.32
  • 98.31
  • 98.20
  • 98.16
  • 97.91
  • 97.43
  • 97.06
  • 97.06
  • 96.99
  • 96.92
  • 96.13
  • 73.68
  • 62.90
  • 53.85
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
225
  • 225
99.25
  • 99.25
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
240
  • 240
  • 1.25e4
  • 1.31e4
99.20
  • 99.20
  • 58.30
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
305
  • 305
98.98
  • 98.98
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
315
  • 315
98.95
  • 98.95
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
346
  • 346
98.85
  • 98.85
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
363
  • 363
  • 475
  • 494
  • 547
  • 568
  • 572
  • 587
  • 590
  • 606
  • 1.12e3
98.79
  • 98.79
  • 98.41
  • 98.35
  • 98.17
  • 98.10
  • 98.09
  • 98.04
  • 98.03
  • 97.97
  • 96.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
406
  • 406
  • 1.28e4
98.64
  • 98.64
  • 57.13
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
450
  • 450
98.49
  • 98.49
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
458
  • 458
  • 497
  • 813
  • 883
  • 1.31e3
98.47
  • 98.47
  • 98.34
  • 97.28
  • 97.04
  • 95.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
459
  • 459
  • 1.28e4
98.47
  • 98.47
  • 57.26
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
483
  • 483
  • 1.52e3
98.38
  • 98.38
  • 94.90
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
493
  • 493
  • 555
  • 583
98.35
  • 98.35
  • 98.14
  • 98.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
521
  • 521
98.26
  • 98.26
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
532
  • 532
98.22
  • 98.22
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
540
  • 540
98.20
  • 98.20
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
542
  • 542
98.19
  • 98.19
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
598
  • 598
  • 858
  • 1.34e4
  • 1.41e4
98.00
  • 98.00
  • 97.13
  • 54.99
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
642
  • 642
97.85
  • 97.85
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
663
  • 663
97.78
  • 97.78
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
708
  • 708
97.63
  • 97.63
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
769
  • 769
  • 1.27e3
  • 1.21e4
97.43
  • 97.43
  • 95.74
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
784
  • 784
  • 978
  • 986
  • 1.06e3
  • 1.26e3
  • 1.77e3
97.38
  • 97.38
  • 96.73
  • 96.70
  • 96.47
  • 95.77
  • 94.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
848
  • 848
97.16
  • 97.16
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
895
  • 895
97.01
  • 97.01
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.07e3
  • 1.07e3
96.43
  • 96.43
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.28
  • 96.28
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.69e3
  • 1.69e3
94.33
  • 94.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.73e3
  • 1.73e3
  • 1.50e4
94.20
  • 94.20
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.55
  • 93.55
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
  • 1.28e4
  • 1.42e4
66.66
  • 66.66
  • 57.14
  • 52.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.19e4
64.28
  • 64.28
  • 60.00
AEIR
  • AEIR
  • AEIR
CL:0000188cell of skeletal muscle
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.21e4
  • 1.21e4
  • 1.28e4
59.36
  • 59.36
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
  • 1.35e4
  • 1.37e4
55.24
  • 55.24
  • 54.73
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0005281ventricular system of central nervous system
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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