D. rerio Gene: pcf11 - ENSDARG00000044625 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044625
Namepcf11
DescriptionPCF11 cleavage and polyadenylation factor subunit [Source:ZFIN;Acc:ZDB-GENE-041114-175]
OrganismDanio rerio (zebrafish)
Synonym(s)im:6912257, im:7138745, wu:fc47a05, zgc:175013, zgc:92226
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.40e3
  • 1.40e3
  • 5.25e3
  • 5.27e3
  • 5.33e3
95.31
  • 95.31
  • 82.42
  • 82.34
  • 82.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.06e3
  • 2.06e3
93.09
  • 93.09
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.28e3
  • 2.28e3
92.38
  • 92.38
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.44e3
  • 2.44e3
91.84
  • 91.84
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.68e3
  • 2.68e3
  • 7.37e3
  • 1.49e4
91.03
  • 91.03
  • 75.33
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
2.78e3
  • 2.78e3
  • 3.29e3
  • 4.37e3
  • 4.52e3
  • 5.09e3
  • 5.27e3
  • 6.56e3
  • 7.35e3
  • 8.41e3
  • 8.66e3
90.68
  • 90.68
  • 88.98
  • 85.38
  • 84.87
  • 82.96
  • 82.35
  • 78.05
  • 75.39
  • 71.85
  • 71.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.95e3
  • 2.95e3
90.11
  • 90.11
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.10e3
  • 3.10e3
  • 3.88e3
89.63
  • 89.63
  • 87.02
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.16e3
  • 3.16e3
  • 6.08e3
  • 6.43e3
  • 7.92e3
  • 8.13e3
89.41
  • 89.41
  • 79.66
  • 78.48
  • 73.47
  • 72.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.14
  • 89.14
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.85e3
  • 3.85e3
  • 4.41e3
87.11
  • 87.11
  • 85.24
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
3.89e3
  • 3.89e3
  • 3.97e3
  • 4.45e3
  • 5.33e3
  • 5.38e3
  • 7.28e3
86.97
  • 86.97
  • 86.70
  • 85.11
  • 82.14
  • 81.99
  • 75.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.98e3
  • 3.98e3
  • 4.23e3
  • 4.31e3
  • 4.34e3
  • 5.31e3
  • 5.84e3
  • 5.84e3
  • 5.98e3
  • 6.06e3
  • 6.07e3
  • 6.43e3
  • 6.61e3
  • 6.72e3
  • 7.65e3
  • 1.16e4
  • 1.34e4
  • 1.34e4
  • 1.47e4
86.68
  • 86.68
  • 85.85
  • 85.56
  • 85.46
  • 82.24
  • 80.44
  • 80.44
  • 79.99
  • 79.71
  • 79.69
  • 78.49
  • 77.86
  • 77.49
  • 74.39
  • 61.10
  • 55.06
  • 55.05
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.18e3
  • 4.18e3
86.01
  • 86.01
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.18e3
  • 4.18e3
86.00
  • 86.00
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
4.27e3
  • 4.27e3
  • 4.27e3
  • 4.27e3
  • 4.60e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 5.98e3
  • 6.22e3
  • 6.40e3
  • 6.97e3
  • 7.03e3
  • 7.03e3
  • 7.12e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.22e3
  • 8.30e3
85.71
  • 85.71
  • 85.71
  • 85.71
  • 84.61
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 79.99
  • 79.16
  • 78.57
  • 76.66
  • 76.46
  • 76.46
  • 76.18
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.32
  • 72.48
  • 72.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.38e3
  • 4.38e3
  • 6.11e3
85.32
  • 85.32
  • 79.53
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
85.17
  • 85.17
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
85.06
  • 85.06
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.91
  • 84.91
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.63e3
  • 4.63e3
  • 1.50e4
84.49
  • 84.49
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.00e3
  • 5.00e3
83.27
  • 83.27
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
82.26
  • 82.26
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.67e3
  • 5.67e3
81.02
  • 81.02
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.68e3
  • 5.68e3
80.99
  • 80.99
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.74e3
  • 5.74e3
80.79
  • 80.79
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
6.18e3
  • 6.18e3
  • 7.95e3
  • 8.64e3
79.32
  • 79.32
  • 73.39
  • 71.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.23e3
  • 6.23e3
79.13
  • 79.13
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.26e3
  • 7.26e3
75.70
  • 75.70
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.42e3
  • 7.42e3
75.14
  • 75.14
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.03e3
  • 9.03e3
69.76
  • 69.76
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000044625.

Cross-references

EnsemblENSDARG00000044625 (pcf11)
ZFINZDB-GENE-041114-175 (pcf11)
EMBLCU928848
Uniprot/SPTREMBLF1QGD0, F1QGD0_DANRE

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