D. rerio Gene: idh3b - ENSDARG00000044753 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044753
Nameidh3b
Descriptionisocitrate dehydrogenase 3 (NAD+) beta [Source:ZFIN;Acc:ZDB-GENE-040625-174]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:86647
Orthologs(s)25 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
813
  • 813
  • 1.16e3
97.28
  • 97.28
  • 96.11
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
981
  • 981
96.72
  • 96.72
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
96.61
  • 96.61
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.12e3
  • 1.12e3
96.27
  • 96.27
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.12e3
  • 1.12e3
96.26
  • 96.26
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.36e3
  • 1.36e3
95.46
  • 95.46
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
95.23
  • 95.23
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
1.54e3
  • 1.54e3
  • 2.06e3
  • 2.44e3
  • 2.75e3
  • 2.91e3
  • 4.13e3
  • 4.37e3
  • 7.01e3
  • 7.14e3
  • 7.16e3
94.84
  • 94.84
  • 93.10
  • 91.82
  • 90.81
  • 90.26
  • 86.17
  • 85.36
  • 76.53
  • 76.10
  • 76.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
94.71
  • 94.71
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.66e3
  • 1.66e3
94.43
  • 94.43
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.89e3
  • 1.89e3
  • 1.35e4
93.68
  • 93.68
  • 54.73
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.97e3
  • 1.97e3
93.40
  • 93.40
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.03e3
  • 2.03e3
  • 6.47e3
  • 1.49e4
93.21
  • 93.21
  • 78.34
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.19
  • 93.19
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.15e3
  • 2.15e3
  • 4.14e3
  • 5.29e3
  • 6.09e3
92.80
  • 92.80
  • 86.15
  • 82.29
  • 79.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.30e3
  • 2.30e3
92.32
  • 92.32
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.30e3
  • 2.30e3
  • 3.09e3
  • 3.89e3
92.29
  • 92.29
  • 89.67
  • 86.98
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.40e3
  • 2.40e3
91.98
  • 91.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
2.43e3
  • 2.43e3
  • 1.12e4
  • 1.21e4
91.88
  • 91.88
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.43e3
  • 2.43e3
  • 3.89e3
91.87
  • 91.87
  • 86.98
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.46e3
  • 2.46e3
91.75
  • 91.75
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
2.98e3
  • 2.98e3
  • 3.43e3
  • 6.09e3
  • 6.61e3
  • 7.96e3
  • 8.05e3
90.03
  • 90.03
  • 88.53
  • 79.62
  • 77.88
  • 73.34
  • 73.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
2.98e3
  • 2.98e3
  • 3.00e3
  • 3.18e3
  • 3.22e3
  • 5.14e3
90.01
  • 90.01
  • 89.96
  • 89.37
  • 89.24
  • 82.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.99e3
  • 2.99e3
89.99
  • 89.99
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.40e3
  • 3.40e3
88.61
  • 88.61
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
3.53e3
  • 3.53e3
  • 4.38e3
  • 4.68e3
  • 5.45e3
  • 5.63e3
  • 5.69e3
  • 5.72e3
  • 5.78e3
  • 6.46e3
  • 6.69e3
  • 6.74e3
  • 7.38e3
  • 7.58e3
  • 7.69e3
  • 1.34e4
  • 1.43e4
  • 1.47e4
88.18
  • 88.18
  • 85.33
  • 84.34
  • 81.76
  • 81.15
  • 80.93
  • 80.85
  • 80.65
  • 78.38
  • 77.60
  • 77.44
  • 75.29
  • 74.63
  • 74.25
  • 55.05
  • 52.23
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.15e3
  • 4.15e3
86.09
  • 86.09
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.31e3
  • 4.31e3
85.59
  • 85.59
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.78e3
  • 4.78e3
84.01
  • 84.01
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.39e3
  • 5.39e3
81.95
  • 81.95
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.45e3
  • 5.45e3
  • 6.51e3
81.76
  • 81.76
  • 78.20
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.85e3
  • 6.85e3
77.05
  • 77.05
AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.96e3
  • 9.96e3
  • 1.12e4
66.66
  • 66.66
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.03e4
66.65
  • 66.65
  • 65.61
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.16e4
62.49
  • 62.49
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.14e4
  • 1.14e4
  • 1.21e4
  • 1.31e4
  • 1.31e4
61.75
  • 61.75
  • 59.36
  • 56.23
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.18e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
60.50
  • 60.50
  • 59.50
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
59.98
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
59.98
  • 59.98
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.21e4
  • 1.21e4
  • 1.26e4
  • 1.26e4
59.50
  • 59.50
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.50e4
55.82
  • 55.82
  • 49.94
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000044753.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000044753.

Cross-references

EnsemblENSDARG00000044753 (idh3b)
ZFINZDB-GENE-040625-174 (idh3b)
EMBLCR847785
Uniprot/SPTREMBLF8W2V6, F8W2V6_DANRE

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