D. rerio Gene: cdk9 - ENSDARG00000044811 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044811
Namecdk9
Descriptioncyclin-dependent kinase 9 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-321]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb22e09, wu:fc06c02
Orthologs(s)23 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
699
  • 699
  • 861
  • 1.30e3
  • 1.37e3
  • 2.13e3
97.66
  • 97.66
  • 97.12
  • 95.66
  • 95.40
  • 92.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.02e3
  • 1.02e3
  • 1.56e3
  • 1.60e3
  • 1.67e3
  • 1.97e3
  • 2.08e3
96.60
  • 96.60
  • 94.77
  • 94.64
  • 94.42
  • 93.40
  • 93.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.15e3
  • 1.15e3
  • 1.43e4
96.15
  • 96.15
  • 52.10
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.27e3
  • 1.27e3
95.75
  • 95.75
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.49e3
  • 1.49e3
95.00
  • 95.00
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.78e3
  • 1.78e3
  • 2.28e3
  • 2.41e3
  • 8.15e3
94.04
  • 94.04
  • 92.37
  • 91.93
  • 72.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.94e3
  • 1.94e3
93.51
  • 93.51
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.94e3
  • 1.94e3
93.50
  • 93.50
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
2.13e3
  • 2.13e3
  • 2.27e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 2.80e3
  • 2.95e3
  • 2.99e3
  • 3.13e3
  • 3.24e3
  • 3.32e3
  • 3.52e3
  • 3.65e3
  • 3.73e3
  • 3.73e3
  • 4.39e3
  • 5.11e3
  • 5.60e3
  • 5.85e3
  • 5.98e3
  • 5.98e3
  • 6.69e3
  • 6.78e3
  • 7.23e3
  • 7.52e3
  • 8.66e3
  • 1.38e4
  • 1.46e4
  • 1.47e4
  • 1.49e4
92.86
  • 92.86
  • 92.39
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.91
  • 90.62
  • 90.13
  • 90.00
  • 89.53
  • 89.16
  • 88.89
  • 88.23
  • 87.79
  • 87.50
  • 87.50
  • 85.29
  • 82.88
  • 81.25
  • 80.40
  • 79.99
  • 79.99
  • 77.59
  • 77.29
  • 75.81
  • 74.83
  • 71.02
  • 53.74
  • 51.01
  • 50.90
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.61
  • 92.61
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.24e3
  • 2.24e3
92.50
  • 92.50
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
2.25e3
  • 2.25e3
  • 2.29e3
  • 2.38e3
  • 2.84e3
  • 2.87e3
  • 3.18e3
  • 3.19e3
  • 3.36e3
  • 3.63e3
  • 3.81e3
92.48
  • 92.48
  • 92.34
  • 92.04
  • 90.49
  • 90.39
  • 89.34
  • 89.31
  • 88.75
  • 87.85
  • 87.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.44
  • 92.44
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.34e3
  • 2.34e3
92.16
  • 92.16
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
92.08
  • 92.08
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.46e3
  • 2.46e3
91.76
  • 91.76
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
91.73
  • 91.73
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
  • 3.08e3
91.70
  • 91.70
  • 89.69
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.46
  • 91.46
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.59e3
  • 2.59e3
91.34
  • 91.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.59
  • 90.59
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.99e3
  • 2.99e3
  • 4.65e3
89.98
  • 89.98
  • 84.43
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.17e3
  • 3.17e3
89.39
  • 89.39
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.31e3
  • 3.31e3
  • 3.79e3
  • 1.49e4
88.93
  • 88.93
  • 87.33
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
88.32
  • 88.32
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
88.31
  • 88.31
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.64e3
  • 3.64e3
87.81
  • 87.81
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.75e3
  • 3.75e3
  • 4.85e3
87.46
  • 87.46
  • 83.76
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.27e3
  • 4.27e3
  • 1.47e4
85.69
  • 85.69
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.30e3
  • 4.30e3
85.60
  • 85.60
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.62e3
  • 4.62e3
  • 4.70e3
  • 5.66e3
84.55
  • 84.55
  • 84.27
  • 81.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.77e3
  • 6.77e3
77.33
  • 77.33
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.34
  • 67.34
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
56.48
  • 56.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000044811.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000044811.

Cross-references

EnsemblENSDARG00000044811 (cdk9)
ZFINZDB-GENE-030131-321 (cdk9)
EMBLAF268046, AY181980, BC055634, BX530036
Uniprot/SPTREMBLQ7SXE8, Q7SXE8_DANRE, Q7T3L5, Q7T3L5_DANRE

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