D. rerio Gene: opn1lw2 - ENSDARG00000044861 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044861
Nameopn1lw2
Descriptionopsin 1 (cone pigments), long-wave-sensitive, 2 [Source:ZFIN;Acc:ZDB-GENE-040718-141]
OrganismDanio rerio (zebrafish)
Synonym(s)lws2, q6dh62, zgc:92632

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
10.3
  • 10.3
  • 7.82e3
  • 1.12e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
  • 1.34e4
99.97
  • 99.97
  • 73.83
  • 62.50
  • 57.12
  • 56.79
  • 56.65
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
36.3
  • 36.3
  • 483
99.88
  • 99.88
  • 98.39
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
135
  • 135
  • 8.66e3
  • 1.97e4
99.55
  • 99.55
  • 71.00
  • 34.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
198
  • 198
  • 1.54e4
99.34
  • 99.34
  • 48.33
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
  • 1.22e4
96.05
  • 96.05
  • 59.16
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
9.17e3
  • 9.17e3
  • 1.14e4
  • 1.32e4
  • 1.47e4
  • 1.50e4
69.30
  • 69.30
  • 61.70
  • 55.92
  • 50.90
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.38
  • 50.38
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.97e4
  • 1.97e4
33.99
  • 33.99
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.87
  • 31.87
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.40
  • 27.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLAB087804, AL844847, BC076120
EnsemblENSDARG00000044861 (opn1lw2)
Uniprot/SWISSPROTOPSR2_DANRE, Q8AYN0
ZFINZDB-GENE-040718-141 (opn1lw2)

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