D. rerio Gene: opn1lw1 - ENSDARG00000044862 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044862
Nameopn1lw1
Descriptionopsin 1 (cone pigments), long-wave-sensitive, 1 [Source:ZFIN;Acc:ZDB-GENE-990604-41]
OrganismDanio rerio (zebrafish)
Synonym(s)lc opsin, lws-1, lws1, q9pwn3, rdops, red-sensitive opsin, zfred
Orthologs(s)20 orthologs
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
22.0
  • 22.0
  • 5.24e3
  • 1.12e4
  • 1.34e4
  • 1.39e4
  • 1.61e4
99.93
  • 99.93
  • 82.45
  • 62.50
  • 54.97
  • 53.31
  • 46.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
92.0
  • 92.0
  • 1.62e3
99.70
  • 99.70
  • 94.57
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
2.70e3
  • 2.70e3
  • 5.09e3
  • 7.99e3
  • 9.89e3
  • 1.47e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
90.96
  • 90.96
  • 82.95
  • 73.24
  • 66.90
  • 50.68
  • 40.32
  • 40.18
  • 39.85
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.47e3
  • 3.47e3
  • 7.71e3
  • 1.22e4
88.37
  • 88.37
  • 74.19
  • 59.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
4.74e3
  • 4.74e3
  • 2.30e4
  • 2.64e4
  • 2.77e4
84.13
  • 84.13
  • 22.96
  • 11.58
  • 7.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000573retinal cone cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 8.96e3
  • 9.96e3
  • 1.12e4
  • 1.31e4
75.00
  • 75.00
  • 69.99
  • 66.67
  • 62.49
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.33e3
  • 9.33e3
  • 9.44e3
  • 1.35e4
  • 1.39e4
  • 1.39e4
  • 1.40e4
  • 1.40e4
  • 1.41e4
68.74
  • 68.74
  • 68.40
  • 54.73
  • 53.31
  • 53.31
  • 53.10
  • 53.10
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.49e4
  • 1.49e4
  • 1.97e4
50.26
  • 50.26
  • 33.88
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.11
  • 50.11
AEIR
  • AEIR
CL:0000497red sensitive photoreceptor cell
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
  • 2.37e4
44.97
  • 44.97
  • 20.67
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.97
  • 33.97
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.96
  • 23.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Bilateria11 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000044862.

Cross-references

EnsemblENSDARG00000044862 (opn1lw1)
ZFINZDB-GENE-990604-41 (opn1lw1)
EMBLAB087803, AF104904, AF109371, BC059415
Uniprot/SWISSPROTOPSR1_DANRE, Q9W6A7

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