D. rerio Gene: hpdb - ENSDARG00000044935 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044935
Namehpdb
Description4-hydroxyphenylpyruvate dioxygenase b [Source:ZFIN;Acc:ZDB-GENE-040808-62]
OrganismDanio rerio (zebrafish)
Synonym(s)hpd, zgc:92456
Orthologs(s)26 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
906
  • 906
  • 1.48e4
96.97
  • 96.97
  • 50.35
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.83e3
  • 1.83e3
  • 5.04e3
93.89
  • 93.89
  • 83.14
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
2.11e3
  • 2.11e3
  • 1.07e4
  • 2.02e4
  • 2.22e4
  • 2.40e4
92.95
  • 92.95
  • 64.31
  • 32.21
  • 25.50
  • 19.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.39
  • 91.39
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
4.01e3
  • 4.01e3
  • 1.39e4
  • 1.49e4
86.58
  • 86.58
  • 53.30
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.27e3
  • 4.27e3
  • 1.14e4
  • 1.23e4
85.71
  • 85.71
  • 61.75
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
  • 1.15e4
  • 1.21e4
83.33
  • 83.33
  • 67.85
  • 67.85
  • 66.65
  • 61.53
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.36e3
  • 6.36e3
78.71
  • 78.71
AEIR
  • AEIR
UBERON:0008897fin
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.31e4
  • 1.34e4
75.00
  • 75.00
  • 56.24
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.04e3
  • 8.04e3
73.08
  • 73.08
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.22e3
  • 8.22e3
  • 8.83e3
  • 9.75e3
  • 1.05e4
  • 1.07e4
  • 1.18e4
  • 1.20e4
72.48
  • 72.48
  • 70.44
  • 67.37
  • 64.97
  • 64.26
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.65e3
  • 8.65e3
71.03
  • 71.03
AEIR
  • AEIR
UBERON:2000040median fin fold
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.19e3
  • 9.19e3
  • 9.96e3
  • 9.96e3
  • 1.16e4
  • 1.31e4
  • 1.33e4
  • 1.33e4
69.22
  • 69.22
  • 66.66
  • 66.66
  • 61.10
  • 56.24
  • 55.55
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.54
  • 62.54
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000026Segmentation:14-19 somites
1.15e4
  • 1.15e4
61.53
  • 61.53
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.91
  • 60.91
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
1.26e4
  • 1.26e4
57.87
  • 57.87
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
  • 1.85e4
51.72
  • 51.72
  • 38.00
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.53
  • 50.53
AEIR
  • AEIR
ZFA:0000821primary neuron hindbrain (Danio)
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.48
  • 42.48
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.57
  • 41.57
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.99
  • 39.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.75
  • 35.75
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.08
  • 29.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000044935.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000044935.

Cross-references

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