D. rerio Gene: slit1a - ENSDARG00000044954 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000044954
Nameslit1a
Descriptionslit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.54e3
  • 1.54e3
  • 1.49e4
  • 1.50e4
94.85
  • 94.85
  • 50.20
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.75
  • 88.75
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.01e3
  • 4.01e3
  • 6.27e3
86.56
  • 86.56
  • 79.02
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
5.18e3
  • 5.18e3
  • 6.02e3
  • 7.02e3
  • 8.11e3
  • 1.13e4
82.67
  • 82.67
  • 79.84
  • 76.49
  • 72.83
  • 62.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 1.08e4
75.00
  • 75.00
  • 75.00
  • 69.99
  • 69.99
  • 69.43
  • 67.48
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.81e3
  • 7.81e3
  • 1.17e4
73.84
  • 73.84
  • 60.97
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.90e3
  • 8.90e3
70.22
  • 70.22
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.85e3
  • 9.85e3
67.03
  • 67.03
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.00e4
  • 1.00e4
66.52
  • 66.52
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.03e4
  • 1.03e4
  • 1.33e4
65.37
  • 65.37
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.73
  • 60.73
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
1.25e4
  • 1.25e4
  • 1.28e4
  • 1.31e4
58.31
  • 58.31
  • 57.12
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.30e4
  • 1.30e4
  • 1.33e4
  • 1.36e4
  • 1.42e4
56.49
  • 56.49
  • 55.53
  • 54.32
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
  • 1.36e4
56.22
  • 56.22
  • 54.46
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.34e4
  • 1.34e4
55.03
  • 55.03
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.79
  • 54.79
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.74
  • 52.74
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.49
  • 51.49
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.42
  • 51.42
AEIR
  • AEIR
UBERON:0001928preoptic area
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.50e4
  • 1.50e4
  • 1.63e4
49.70
  • 49.70
  • 45.38
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
47.96
  • 47.96
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.34
  • 47.34
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.38
  • 45.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.97
  • 40.97
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.77e4
  • 1.77e4
40.73
  • 40.73
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.55
  • 37.55
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.24
  • 35.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX005147, CU462915
EnsemblENSDARG00000044954 (slit1a)
Uniprot/SPTREMBLB8A498, B8A498_DANRE
ZFINZDB-GENE-030722-3 (slit1a)

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